Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2493957..2494191 | Replicon | chromosome |
| Accession | NZ_CP018237 | ||
| Organism | Escherichia coli strain 155 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2493958..2494061 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2493957..2494191 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFL20_RS13860 | 2491154..2491964 | + | 811 | Protein_2459 | recombination protein RecT | - |
| BFL20_RS13865 | 2492021..2492215 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| BFL20_RS13870 | 2492208..2492396 | + | 189 | WP_072612771.1 | DUF1187 family protein | - |
| - | 2492214..2492392 | - | 179 | NuclAT_0 | - | - |
| - | 2492214..2492392 | - | 179 | NuclAT_0 | - | - |
| - | 2492214..2492392 | - | 179 | NuclAT_0 | - | - |
| - | 2492214..2492392 | - | 179 | NuclAT_0 | - | - |
| BFL20_RS13875 | 2492503..2492784 | + | 282 | WP_001311878.1 | excisionase | - |
| BFL20_RS13880 | 2492750..2493826 | + | 1077 | WP_072612772.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2493957..2494191 | + | 235 | - | - | Antitoxin |
| - | 2493958..2494061 | - | 104 | - | - | Toxin |
| BFL20_RS13890 | 2494219..2494560 | - | 342 | WP_000976483.1 | YebY family protein | - |
| BFL20_RS13895 | 2494573..2495445 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| BFL20_RS13900 | 2495449..2495823 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| BFL20_RS13905 | 2495962..2496192 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BFL20_RS13910 | 2496294..2496950 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| BFL20_RS13915 | 2496974..2497636 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T68985 NZ_CP018237:c2494061-2493958 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTACTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTACTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT68985 NZ_CP018237:2493957-2494191 [Escherichia coli]
TAAAAAAAGACCGAGTACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAGTACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
