Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2660177..2660448 | Replicon | chromosome |
| Accession | NZ_CP018206 | ||
| Organism | Escherichia coli strain MRSN346647 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2660215..2660318 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2660177..2660448 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSZ13_RS13680 | 2657334..2658773 | + | 1440 | WP_049068043.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BSZ13_RS13685 | 2658891..2659127 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BSZ13_RS13690 | 2659232..2659423 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BSZ13_RS13695 | 2659424..2660080 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 2660177..2660448 | + | 272 | - | - | Antitoxin |
| - | 2660215..2660318 | - | 104 | - | - | Toxin |
| BSZ13_RS13710 | 2660476..2660817 | - | 342 | WP_000976472.1 | YebY family protein | - |
| BSZ13_RS13715 | 2660830..2661702 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| BSZ13_RS13720 | 2661706..2662080 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BSZ13_RS13725 | 2662219..2662449 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BSZ13_RS13730 | 2662551..2663207 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| BSZ13_RS13735 | 2663231..2663893 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2644337..2669621 | 25284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T68932 NZ_CP018206:c2660318-2660215 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT68932 NZ_CP018206:2660177-2660448 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
