Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/HicA-HicB
Location 1587533..1588201 Replicon chromosome
Accession NZ_CP018138
Organism Streptococcus pneumoniae strain SP64

Toxin (Protein)


Gene name hicA Uniprot ID C1C927
Locus tag BOC72_RS08600 Protein ID WP_001132282.1
Coordinates 1588022..1588201 (-) Length 60 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID G0IC64
Locus tag BOC72_RS08595 Protein ID WP_000961810.1
Coordinates 1587533..1587985 (-) Length 151 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BOC72_RS08575 1584382..1585416 - 1035 WP_000747915.1 ATP-binding protein -
BOC72_RS08580 1585526..1585684 - 159 WP_000418159.1 7,8-dihydro-8-oxoguanine-triphosphatase -
BOC72_RS08585 1585665..1586753 - 1089 WP_000719711.1 M50 family metallopeptidase -
BOC72_RS08590 1586772..1587242 - 471 WP_000257114.1 DUF3013 family protein -
BOC72_RS08595 1587533..1587985 - 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
BOC72_RS08600 1588022..1588201 - 180 WP_001132282.1 type II toxin-antitoxin system HicA family toxin Toxin
BOC72_RS08605 1588338..1588517 - 180 WP_001048906.1 hypothetical protein -
BOC72_RS08610 1588682..1588921 - 240 WP_000818079.1 hypothetical protein -
BOC72_RS08620 1589191..1590462 + 1272 WP_001113206.1 replication-associated recombination protein A -
BOC72_RS08630 1591009..1592328 - 1320 WP_000502563.1 glycoside hydrolase family 32 protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(6-59)

Antitoxin

HicB-like antitoxin of toxin-antitoxin system

(17-114)


Sequences

Toxin        


Download         Length: 60 a.a.        Molecular weight: 6713.95 Da        Isoelectric Point: 11.0174

>T68837 WP_001132282.1 NZ_CP018138:c1588201-1588022 [Streptococcus pneumoniae]
MPMTQKEMVKLLTAHGWIKTRGGKGSHIKMEKQGERLITIPHGELNKYTERGIRKQAGL

Download         Length: 180 bp

>T68837 NZ_CP018138:c1588201-1588022 [Streptococcus pneumoniae]
ATGCCTATGACACAAAAAGAGATGGTTAAACTCCTTACGGCCCATGGTTGGATAAAGACTAGAGGCGGTAAAGGCTCCCA
TATTAAAATGGAGAAGCAAGGGGAAAGACTTATCACAATCCCTCATGGTGAGCTGAATAAGTACACTGAAAGAGGGATAA
GAAAGCAAGCTGGGTTGTAA

Antitoxin


Download         Length: 151 a.a.        Molecular weight: 16659.46 Da        Isoelectric Point: 3.7220

>AT68837 WP_000961810.1 NZ_CP018138:c1587985-1587533 [Streptococcus pneumoniae]
MLVTYPALFYYDDTDGTEATYFVHFPDFEYSATQGEGISEALAMGSEWLGITVADLIESDGELPQPSDINSLSLIDNDPF
KDDEDFVSTYDLDKSFISMVSVDVSEYLGSQEPIKKTLTIPKWADKLGREMGLNFSQTLTDAIADKKVQA

Download         Length: 453 bp

>AT68837 NZ_CP018138:c1587985-1587533 [Streptococcus pneumoniae]
ATGTTAGTTACGTATCCAGCTTTATTTTATTATGACGACACAGACGGAACAGAAGCGACTTATTTTGTCCATTTCCCAGA
TTTTGAATACTCAGCTACACAAGGAGAGGGGATTTCTGAGGCTTTGGCTATGGGGTCGGAGTGGCTAGGGATAACTGTTG
CAGATTTGATAGAGAGTGATGGAGAGTTACCTCAGCCATCAGATATCAATAGCTTGTCTTTAATTGATAATGATCCTTTT
AAAGATGATGAAGATTTCGTGTCAACCTATGACCTTGATAAATCTTTTATTTCTATGGTATCTGTTGATGTATCAGAATA
CCTAGGAAGTCAGGAACCCATTAAAAAGACTTTGACTATACCAAAATGGGCAGATAAGTTGGGACGAGAAATGGGACTTA
ACTTTTCTCAGACTTTGACAGACGCTATTGCAGATAAGAAAGTTCAAGCCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E7SUI3

Antitoxin

Source ID Structure
PDB 5YRZ
AlphaFold DB G0IC64

References