Detailed information of TA system TA068824

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): TsxAB/Xre(antitoxin)
• Location: 6860..7361
• Replicon: plasmid pMRSN346355_65.5
• Accession: NZ_CP018124
• Organism: Escherichia coli strain MRSN346355

Toxin (Protein)

• Gene name: TsxA
• Uniprot ID: A0A1Z1UZ55
• Locus tag: BSG24_RS26270
• Protein ID: WP_052982837.1
• Coordinates: 6860..7120 (+)
• Length: 87 a.a.

Antitoxin (Protein)

• Gene name: TsxB
• Uniprot ID: -
• Locus tag: BSG24_RS26275
• Protein ID: WP_000931278.1
• Coordinates: 7110..7361 (+)
• Length: 84 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BSG24_RS26220	2456..2617	+	162	WP_000775236.1	type I toxin-antitoxin system Hok family toxin	-
BSG24_RS26225	2767..3363	+	597	WP_000125165.1	hypothetical protein	-
BSG24_RS28750	3381..3665	-	285	WP_001162371.1	hypothetical protein	-
BSG24_RS26235	3739..4404	-	666	WP_000532148.1	P-loop NTPase	-
BSG24_RS26245	5001..5330	+	330	WP_000855118.1	hypothetical protein	-
BSG24_RS26255	5911..6234	+	324	WP_000427402.1	hypothetical protein	-
BSG24_RS26260	6277..6486	+	210	WP_000866037.1	hypothetical protein	-
BSG24_RS26265	6584..6808	+	225	WP_000814384.1	hypothetical protein	-
BSG24_RS26270	6860..7120	+	261	WP_052982837.1	hypothetical protein	Toxin
BSG24_RS26275	7110..7361	+	252	WP_000931278.1	transcriptional regulator	Antitoxin
BSG24_RS27835	7432..7497	-	66	Protein_11	transposase	-
BSG24_RS26280	7522..8730	+	1209	WP_071940821.1	transposase	-
BSG24_RS26290	9247..9525	+	279	WP_000545938.1	hypothetical protein	-
BSG24_RS26295	9787..11013	-	1227	WP_071940830.1	transposase	-
BSG24_RS26300	11072..11476	+	405	WP_053001740.1	IS200/IS605 family transposase	-
BSG24_RS26310	11762..12028	+	267	WP_000681608.1	type II toxin-antitoxin system HicB family antitoxin	-
BSG24_RS26315	12135..12317	-	183	WP_001481829.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Mobilizable plasmid	mcr-1.1	-	1..65539	65539

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Cro/C1-type helix-turn-helix domain (8-37)

Sequences

Toxin

Protein

• Length: 87 a.a.
• Molecular weight: 9907.48 Da
• Isoelectric Point: 10.0665

>T68824 WP_052982837.1 NZ_CP018124:6860-7120 [Escherichia coli]
MKIRKGDRQYYLNKEGDMFHLVKRVKTFSKSATLGKTKATVKTVADLVFHEKAFDTIDFASDGLRENDKEIVFMMIQEMS
EGKNAK

Nucleotide

• Length: 261 bp

>T68824 NZ_CP018124:6860-7120 [Escherichia coli]
ATGAAGATAAGAAAAGGTGACAGACAATATTATCTGAATAAAGAAGGTGATATGTTTCATCTGGTGAAGCGAGTAAAAAC
TTTTTCTAAGTCTGCGACTTTAGGAAAAACGAAAGCAACGGTGAAAACTGTTGCCGATCTTGTTTTTCATGAGAAGGCAT
TCGACACTATCGACTTTGCCAGCGACGGATTAAGAGAGAATGATAAAGAAATTGTTTTTATGATGATTCAGGAAATGAGC
GAGGGAAAAAATGCTAAATGA

Antitoxin

Protein

• Length: 84 a.a.
• Molecular weight: 9420.81 Da
• Isoelectric Point: 9.8120

>AT68824 WP_000931278.1 NZ_CP018124:7110-7361 [Escherichia coli]
MLNENTPENIKRLRQKIGLTQKECAEIFSMSPRTWRRKEEPVGTASGTALTPVEFKFLLLLAGEHPDYVLCKRNKKNSDS
GSN

Nucleotide

• Length: 252 bp

>AT68824 NZ_CP018124:7110-7361 [Escherichia coli]
ATGCTAAATGAAAACACACCAGAAAACATTAAACGTCTGCGGCAAAAAATTGGCCTGACACAGAAAGAATGTGCCGAAAT
ATTCAGCATGAGTCCGCGTACCTGGCGTCGCAAAGAAGAACCTGTCGGAACTGCAAGCGGTACAGCACTTACACCAGTAG
AGTTTAAATTTCTTCTGCTTTTAGCTGGAGAACACCCTGATTATGTACTTTGTAAAAGGAATAAAAAGAATTCTGATTCT
GGAAGTAATTAA

Structures

Toxin

• AlphaFold DB: A0A1Z1UZ55