Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2005900..2006171 | Replicon | chromosome |
| Accession | NZ_CP018121 | ||
| Organism | Escherichia coli strain MRSN346355 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2005938..2006041 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2005900..2006171 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSG24_RS10505 | 2003057..2004496 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BSG24_RS10510 | 2004614..2004850 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BSG24_RS10515 | 2004955..2005146 | + | 192 | WP_000457842.1 | YebW family protein | - |
| BSG24_RS10520 | 2005147..2005803 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2005900..2006171 | + | 272 | - | - | Antitoxin |
| - | 2005938..2006041 | - | 104 | - | - | Toxin |
| BSG24_RS10530 | 2006199..2006540 | - | 342 | WP_000976476.1 | YebY family protein | - |
| BSG24_RS10535 | 2006553..2007425 | - | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| BSG24_RS10540 | 2007429..2007803 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BSG24_RS10545 | 2007942..2008172 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BSG24_RS10550 | 2008274..2008930 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BSG24_RS10555 | 2008954..2009616 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T68800 NZ_CP018121:c2006041-2005938 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT68800 NZ_CP018121:2005900-2006171 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
