Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2006972..2007243 | Replicon | chromosome |
| Accession | NZ_CP018115 | ||
| Organism | Escherichia coli strain MRSN346638 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2007010..2007113 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2006972..2007243 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSG23_RS10515 | 2004129..2005568 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BSG23_RS10520 | 2005686..2005922 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BSG23_RS10525 | 2006027..2006218 | + | 192 | WP_000457842.1 | YebW family protein | - |
| BSG23_RS10530 | 2006219..2006875 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2006972..2007243 | + | 272 | - | - | Antitoxin |
| - | 2007010..2007113 | - | 104 | - | - | Toxin |
| BSG23_RS10540 | 2007271..2007612 | - | 342 | WP_000976476.1 | YebY family protein | - |
| BSG23_RS10545 | 2007625..2008497 | - | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| BSG23_RS10550 | 2008501..2008875 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BSG23_RS10555 | 2009014..2009244 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BSG23_RS10560 | 2009346..2010002 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BSG23_RS10565 | 2010026..2010688 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T68767 NZ_CP018115:c2007113-2007010 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT68767 NZ_CP018115:2006972-2007243 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
