Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 1142485..1142932 Replicon chromosome
Accession NZ_CP018049
Organism Pseudomonas orientalis strain F9

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag BOP93_RS05115 Protein ID WP_104501776.1
Coordinates 1142663..1142932 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag BOP93_RS05110 Protein ID WP_104501775.1
Coordinates 1142485..1142673 (+) Length 63 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BOP93_RS05085 1137875..1139182 + 1308 Protein_970 aromatic acid/H+ symport family MFS transporter -
BOP93_RS05090 1139334..1140137 - 804 WP_104501772.1 tetratricopeptide repeat protein -
BOP93_RS05095 1140325..1141344 + 1020 WP_104501773.1 Glu/Leu/Phe/Val dehydrogenase -
BOP93_RS05100 1141399..1141659 - 261 WP_003171979.1 YebG family protein -
BOP93_RS05105 1142086..1142331 + 246 WP_104501774.1 DUF3077 domain-containing protein -
BOP93_RS05110 1142485..1142673 + 189 WP_104501775.1 antitoxin Antitoxin
BOP93_RS05115 1142663..1142932 + 270 WP_104501776.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BOP93_RS05120 1143101..1143343 + 243 Protein_977 phosphate-starvation-inducible protein PsiE -
BOP93_RS05125 1143486..1143935 + 450 WP_104501778.1 phosphate-starvation-inducible PsiE family protein -
BOP93_RS05130 1143999..1144955 + 957 WP_104501779.1 hypothetical protein -
BOP93_RS27275 1145341..1146288 - 948 WP_157943445.1 hypothetical protein -
BOP93_RS05135 1146285..1147250 - 966 WP_104501780.1 DGQHR domain-containing protein -
BOP93_RS05140 1147597..1147851 + 255 Protein_982 phosphate-starvation-inducible PsiE family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10174.82 Da        Isoelectric Point: 10.5147

>T68620 WP_104501776.1 NZ_CP018049:1142663-1142932 [Pseudomonas orientalis]
MLIEWAPAARAQLRQITDFISDRNPVAALELNQAIEASVLALSRRPHLYRPGRVIGTREMVVHPNYLVVYQVTDSVRVLS
VLHARQRYP

Download         Length: 270 bp

>T68620 NZ_CP018049:1142663-1142932 [Pseudomonas orientalis]
ATGCTGATTGAGTGGGCCCCCGCAGCGCGGGCACAACTCCGGCAAATTACTGATTTCATCAGCGACCGCAATCCAGTTGC
AGCGCTTGAGCTAAACCAAGCAATAGAAGCCTCAGTTTTGGCGCTCTCCCGTAGACCCCATCTCTATCGCCCAGGGCGCG
TTATTGGTACGCGAGAGATGGTGGTACACCCGAATTATCTGGTTGTCTATCAGGTAACAGACAGCGTTCGGGTGCTCTCA
GTTTTACACGCTCGCCAGCGATATCCTTGA

Antitoxin


Download         Length: 63 a.a.        Molecular weight: 7013.59 Da        Isoelectric Point: 4.0552

>AT68620 WP_104501775.1 NZ_CP018049:1142485-1142673 [Pseudomonas orientalis]
MDTSFSSDIQADNEEQADSYDRWFRAKVQAALDDPNPGIPHDEVMAEMRALIESKRKQGDAD

Download         Length: 189 bp

>AT68620 NZ_CP018049:1142485-1142673 [Pseudomonas orientalis]
ATGGACACTTCCTTTTCCTCTGATATCCAAGCAGATAACGAAGAGCAGGCCGACAGCTACGACCGCTGGTTTCGTGCCAA
GGTACAGGCTGCTCTTGATGATCCAAACCCTGGCATTCCTCATGATGAGGTGATGGCGGAAATGCGTGCGCTGATTGAAT
CAAAACGCAAGCAAGGCGATGCTGATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References