Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2210719..2210886 | Replicon | chromosome |
| Accession | NZ_CP018016 | ||
| Organism | Kosakonia radicincitans DSM 16656 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2210779..2210881 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2210719..2210886 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y71_RS10805 | 2205919..2207979 | + | 2061 | WP_007371601.1 | oligopeptidase B | - |
| Y71_RS10810 | 2207976..2208638 | - | 663 | WP_007371602.1 | exodeoxyribonuclease X | - |
| Y71_RS10815 | 2208650..2208880 | - | 231 | WP_007371603.1 | DNA polymerase III subunit theta | - |
| Y71_RS10820 | 2209018..2209392 | + | 375 | WP_007371604.1 | CopC domain-containing protein YobA | - |
| Y71_RS10825 | 2209396..2210265 | + | 870 | WP_007371605.1 | copper homeostasis membrane protein CopD | - |
| Y71_RS10830 | 2210284..2210622 | + | 339 | WP_035887479.1 | YebY family protein | - |
| - | 2210719..2210886 | - | 168 | - | - | Antitoxin |
| - | 2210779..2210881 | + | 103 | - | - | Toxin |
| Y71_RS10835 | 2211377..2211907 | + | 531 | WP_007371608.1 | lipocalin family protein | - |
| Y71_RS10840 | 2212015..2212803 | - | 789 | WP_007371609.1 | MipA/OmpV family protein | - |
| Y71_RS10845 | 2212931..2213626 | + | 696 | WP_007371610.1 | response regulator | - |
| Y71_RS10850 | 2213623..2214801 | + | 1179 | WP_007371611.1 | two-component sensor histidine kinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T68530 NZ_CP018016:2210779-2210881 [Kosakonia radicincitans DSM 16656]
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT68530 NZ_CP018016:c2210886-2210719 [Kosakonia radicincitans DSM 16656]
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
