Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 643407..643552 | Replicon | chromosome |
| Accession | NZ_CP017994 | ||
| Organism | Klebsiella pneumoniae strain P1428 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 643414..643516 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 643407..643552 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BMF28_RS03290 | 638939..640372 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BMF28_RS03295 | 640488..640727 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BMF28_RS03300 | 640825..641016 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BMF28_RS03305 | 641013..641666 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| BMF28_RS03310 | 641823..642791 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| BMF28_RS27995 | 642896..643039 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 643407..643552 | + | 146 | - | - | Antitoxin |
| - | 643414..643516 | - | 103 | - | - | Toxin |
| BMF28_RS03320 | 643675..644013 | - | 339 | WP_002911404.1 | YebY family protein | - |
| BMF28_RS03325 | 644030..644899 | - | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| BMF28_RS03330 | 644903..645277 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BMF28_RS03335 | 645390..645620 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BMF28_RS03340 | 645699..646358 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BMF28_RS03345 | 646362..648422 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T68495 NZ_CP017994:c643516-643414 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT68495 NZ_CP017994:643407-643552 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
