Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2975343..2975494 | Replicon | chromosome |
| Accession | NZ_CP017990 | ||
| Organism | Enterobacter cloacae complex sp. ECNIH7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2975356..2975459 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2975343..2975494 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WM95_RS14575 | 2971616..2973058 | + | 1443 | WP_063408606.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WM95_RS14580 | 2973165..2973404 | + | 240 | WP_008500472.1 | YebV family protein | - |
| WM95_RS14585 | 2973439..2974083 | - | 645 | WP_047173214.1 | protein-serine/threonine phosphatase | - |
| WM95_RS14590 | 2974249..2975190 | + | 942 | WP_045355982.1 | VirK/YbjX family protein | - |
| - | 2975343..2975494 | + | 152 | - | - | Antitoxin |
| - | 2975356..2975459 | - | 104 | - | - | Toxin |
| WM95_RS14595 | 2975598..2975936 | - | 339 | WP_045355981.1 | YebY family protein | - |
| WM95_RS14600 | 2975953..2976822 | - | 870 | WP_088544821.1 | copper homeostasis membrane protein CopD | - |
| WM95_RS14605 | 2976824..2977195 | - | 372 | WP_063408160.1 | CopC domain-containing protein YobA | - |
| WM95_RS14610 | 2977332..2977562 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| WM95_RS14615 | 2977673..2978323 | + | 651 | WP_088544822.1 | carbon-nitrogen hydrolase family protein | - |
| WM95_RS14620 | 2978348..2979010 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T68479 NZ_CP017990:c2975459-2975356 [Enterobacter cloacae complex sp. ECNIH7]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT68479 NZ_CP017990:2975343-2975494 [Enterobacter cloacae complex sp. ECNIH7]
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
