Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1828171..1828442 | Replicon | chromosome |
| Accession | NZ_CP017979 | ||
| Organism | Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1828209..1828312 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1828171..1828442 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BL257_RS09855 (BL257_09205) | 1825328..1826767 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BL257_RS09860 (BL257_09210) | 1826885..1827121 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BL257_RS09865 (BL257_09215) | 1827226..1827417 | + | 192 | WP_000457842.1 | YebW family protein | - |
| BL257_RS09870 (BL257_09220) | 1827418..1828074 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1828171..1828442 | + | 272 | - | - | Antitoxin |
| - | 1828209..1828312 | - | 104 | - | - | Toxin |
| BL257_RS09880 (BL257_09230) | 1828470..1828811 | - | 342 | WP_000976476.1 | YebY family protein | - |
| BL257_RS09885 (BL257_09235) | 1828824..1829696 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| BL257_RS09890 (BL257_09240) | 1829700..1830074 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BL257_RS09895 (BL257_09245) | 1830213..1830443 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BL257_RS09900 (BL257_09250) | 1830545..1831201 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BL257_RS09905 (BL257_09255) | 1831225..1831887 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T68426 NZ_CP017979:c1828312-1828209 [Escherichia coli str. K-12 substr. W3110]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT68426 NZ_CP017979:1828171-1828442 [Escherichia coli str. K-12 substr. W3110]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
