Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5345212..5345357 | Replicon | chromosome |
| Accession | NZ_CP017934 | ||
| Organism | Klebsiella pneumoniae strain CAV1016 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5345248..5345350 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5345212..5345357 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AGE75_RS26465 | 5340342..5342402 | + | 2061 | WP_032419805.1 | oligopeptidase B | - |
| AGE75_RS26470 | 5342406..5343065 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AGE75_RS26475 | 5343144..5343374 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AGE75_RS26480 | 5343487..5343861 | + | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| AGE75_RS26485 | 5343865..5344734 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AGE75_RS26490 | 5344751..5345089 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 5345212..5345357 | - | 146 | - | - | Antitoxin |
| - | 5345248..5345350 | + | 103 | - | - | Toxin |
| AGE75_RS29970 | 5345725..5345868 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AGE75_RS26500 | 5345973..5346941 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| AGE75_RS26505 | 5347098..5347751 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| AGE75_RS26510 | 5347748..5347939 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AGE75_RS26515 | 5348037..5348276 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AGE75_RS26520 | 5348392..5349825 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T68375 NZ_CP017934:5345248-5345350 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT68375 NZ_CP017934:c5345357-5345212 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
