Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2156446..2156591 | Replicon | chromosome |
| Accession | NZ_CP017928 | ||
| Organism | Klebsiella oxytoca strain CAV1015 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2156453..2156556 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2156446..2156591 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AGF18_RS10015 | 2151719..2152237 | + | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
| AGF18_RS10020 | 2152255..2153019 | + | 765 | WP_004103339.1 | molecular chaperone | - |
| AGF18_RS10025 | 2153022..2155355 | + | 2334 | WP_047720986.1 | fimbrial biogenesis outer membrane usher protein | - |
| AGF18_RS10030 | 2155367..2156326 | + | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| - | 2156446..2156591 | + | 146 | - | - | Antitoxin |
| - | 2156453..2156556 | - | 104 | - | - | Toxin |
| AGF18_RS10035 | 2156713..2157051 | - | 339 | WP_004103344.1 | YebY family protein | - |
| AGF18_RS10040 | 2157068..2157937 | - | 870 | WP_047720985.1 | copper homeostasis membrane protein CopD | - |
| AGF18_RS10045 | 2157942..2158316 | - | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| AGF18_RS10050 | 2158452..2158682 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| AGF18_RS10055 | 2158761..2159420 | + | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| AGF18_RS10060 | 2159427..2161487 | - | 2061 | WP_016808307.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T68353 NZ_CP017928:c2156556-2156453 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT68353 NZ_CP017928:2156446-2156591 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
