Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/PIN-CcdA
Location 2732462..2733138 Replicon chromosome
Accession NZ_CP017920
Organism Mycobacterium tuberculosis strain TB282

Toxin (Protein)


Gene name vapC Uniprot ID G0TPQ9
Locus tag BK419_RS13060 Protein ID WP_003898500.1
Coordinates 2732725..2733138 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TPR0
Locus tag BK419_RS13055 Protein ID WP_003402915.1
Coordinates 2732462..2732728 (+) Length 89 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BK419_RS13040 2727896..2728876 - 981 WP_003402923.1 o-succinylbenzoate synthase -
BK419_RS13045 2728873..2730477 - 1605 WP_003402920.1 amidohydrolase -
BK419_RS13050 2730555..2732270 + 1716 WP_003402917.1 fatty-acid--CoA ligase FadD8 -
BK419_RS13055 2732462..2732728 + 267 WP_003402915.1 antitoxin VapB3 Antitoxin
BK419_RS13060 2732725..2733138 + 414 WP_003898500.1 PIN domain-containing protein Toxin
BK419_RS13065 2733452..2734354 + 903 WP_003915439.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
BK419_RS13070 2734450..2735334 + 885 WP_003402909.1 SDR family oxidoreductase -
BK419_RS13075 2735397..2735783 + 387 WP_003402907.1 VOC family protein -
BK419_RS13080 2735903..2737156 + 1254 WP_003402904.1 inorganic phosphate transporter family protein -
BK419_RS13085 2737153..2737431 + 279 WP_003402901.1 hypothetical protein -
BK419_RS13090 2737491..2737793 + 303 WP_003402896.1 DUF3349 domain-containing protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(13-129)

Antitoxin

(19-61)


Sequences


Toxin        


Download         Length: 138 a.a.        Molecular weight: 14667.78 Da        Isoelectric Point: 7.3603

>T68332 WP_003898500.1 NZ_CP017920:2732725-2733138 [Mycobacterium tuberculosis]
VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQV
PVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWPSAHAIG

Download         Length: 414 bp

>T68332 NZ_CP017920:2732725-2733138 [Mycobacterium tuberculosis]
GTGAGAGCATCGCCCACTTCGCCGCCGGAGCAGGTGGTCGTCGACGCGAGTGCCATGGTGGATCTACTGGCTCGCACTAG
CGATCGGTGCTCTGCGGTGCGCGCGCGGCTGGCTCGGACCGCGATGCACGCGCCGGCGCACTTCGATGCAGAGGTGTTGT
CGGCGCTGGGGCGCATGCAGCGCGCCGGCGCACTCACCGTTGCCTATGTCGATGCGGCACTGGAGGAGTTGCGACAGGTG
CCGGTGACTCGACACGGTCTTTCGTCGCTGCTTGCTGGAGCGTGGTCGCGCCGCGACACCCTCCGCCTGACCGATGCCCT
CTACGTCGAGCTGGCCGAAACGGCAGGTCTGGTGTTGTTGACCACCGACGAAAGATTGGCACGCGCCTGGCCCTCGGCTC
ACGCCATCGGCTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9543.79 Da        Isoelectric Point: 4.5994

>AT68332 WP_003402915.1 NZ_CP017920:2732462-2732728 [Mycobacterium tuberculosis]
MLSRRTKTIVVCTLVCMARLNVYVPDELAERARARGLNVSALTQAAISAELENSATDAWLEGLEPRSTGARHDDVLGAID
AARDEFEA

Download         Length: 267 bp

>AT68332 NZ_CP017920:2732462-2732728 [Mycobacterium tuberculosis]
TTGTTGAGCCGGCGCACGAAAACGATCGTTGTGTGTACATTGGTGTGTATGGCTCGGTTGAACGTGTATGTGCCCGACGA
ATTGGCGGAGCGCGCCAGGGCGCGGGGCTTGAACGTCTCGGCGCTGACTCAGGCCGCGATCAGTGCCGAGTTGGAGAACT
CCGCAACCGATGCGTGGCTTGAGGGGTTGGAACCCAGAAGCACCGGCGCTCGGCATGATGACGTGCTGGGTGCGATCGAT
GCCGCTCGCGATGAGTTCGAAGCGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB G0TPQ9


Antitoxin

Source ID Structure
AlphaFold DB G0TPR0

References