Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 1954163..1954710 Replicon chromosome
Accession NZ_CP017907
Organism Vibrio alginolyticus strain K06K5

Toxin (Protein)


Gene name relE Uniprot ID A0A4P8FYK5
Locus tag K06K5_RS09105 Protein ID WP_005377013.1
Coordinates 1954163..1954465 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A4P8G149
Locus tag K06K5_RS09110 Protein ID WP_005377012.1
Coordinates 1954453..1954710 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K06K5_RS09050 1949235..1949651 - 417 WP_157664637.1 hypothetical protein -
K06K5_RS09055 1949620..1950471 - 852 WP_054730937.1 IS3 family transposase -
K06K5_RS09060 1950555..1950776 - 222 Protein_1714 transposase -
K06K5_RS09065 1950967..1951443 - 477 WP_086046816.1 GNAT family N-acetyltransferase -
K06K5_RS09070 1951471..1951563 - 93 WP_005526494.1 DUF3265 domain-containing protein -
K06K5_RS09075 1951578..1952087 - 510 WP_005377035.1 GNAT family N-acetyltransferase -
K06K5_RS09080 1952233..1952715 - 483 WP_017821432.1 hypothetical protein -
K06K5_RS09085 1952866..1953354 - 489 WP_054730711.1 DUF523 domain-containing protein -
K06K5_RS09090 1953393..1953485 - 93 WP_197687490.1 DUF3265 domain-containing protein -
K06K5_RS09095 1953515..1953985 - 471 WP_054730714.1 GNAT family N-acetyltransferase -
K06K5_RS09100 1954035..1954127 - 93 WP_086046818.1 DUF3265 domain-containing protein -
K06K5_RS09105 1954163..1954465 - 303 WP_005377013.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
K06K5_RS09110 1954453..1954710 - 258 WP_005377012.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
K06K5_RS09115 1954914..1955471 - 558 WP_054730719.1 hypothetical protein -
K06K5_RS09120 1955586..1955837 - 252 WP_054730722.1 hypothetical protein -
K06K5_RS26735 1955851..1956081 - 231 WP_157664342.1 hypothetical protein -
K06K5_RS09125 1956117..1956209 - 93 WP_080256086.1 DUF3265 domain-containing protein -
K06K5_RS09130 1956243..1956659 - 417 WP_033907128.1 DUF1311 domain-containing protein -
K06K5_RS09135 1956689..1956781 - 93 WP_079858050.1 DUF3265 domain-containing protein -
K06K5_RS09140 1956807..1957154 - 348 WP_005448158.1 nucleic acid-binding protein -
K06K5_RS09145 1957182..1957292 - 111 WP_085570176.1 DUF3265 domain-containing protein -
K06K5_RS09150 1957300..1957644 - 345 WP_054730730.1 antibiotic biosynthesis monooxygenase -
K06K5_RS09155 1957769..1957861 - 93 WP_078535132.1 DUF3265 domain-containing protein -
K06K5_RS09160 1957894..1958160 - 267 WP_054730732.1 hypothetical protein -
K06K5_RS09165 1958321..1958998 - 678 WP_054730736.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 1938720..2082868 144148
- inside Integron - - 1950468..1970014 19546


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-69)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11651.54 Da        Isoelectric Point: 5.1765

>T68274 WP_005377013.1 NZ_CP017907:c1954465-1954163 [Vibrio alginolyticus]
MAEIIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLQTFPESGRIPPELEHLSYREVVVNPCRVFYKQDGDKV
FILFVIRAERDLRKFLLSKQ

Download         Length: 303 bp

>T68274 NZ_CP017907:c1954465-1954163 [Vibrio alginolyticus]
ATGGCTGAAATAATCTGGACTGAACCAGCGTTATCTGACCTCAACGATATCGCTGAATACATCGCACTTGAAAATATCGT
AGCTGCAAAGCAGTTAGTGCAAACGATCTTCTCCAAAGTCGAACGCCTACAAACTTTCCCAGAGTCAGGTCGTATTCCAC
CCGAGCTAGAACATCTAAGTTATCGTGAAGTTGTCGTTAATCCATGTCGTGTTTTCTATAAACAAGACGGTGACAAAGTG
TTTATTCTGTTTGTTATTCGTGCAGAGAGAGATTTGCGTAAGTTCCTGTTGAGTAAGCAGTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9620.12 Da        Isoelectric Point: 6.7269

>AT68274 WP_005377012.1 NZ_CP017907:c1954710-1954453 [Vibrio alginolyticus]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVISHDEAKDKM
SKWLK

Download         Length: 258 bp

>AT68274 NZ_CP017907:c1954710-1954453 [Vibrio alginolyticus]
ATGAAAGTAGAACTAGTTACATCACTCAAACGTCAAGCAACTAAGATCCTCGCGGATCTCCACGATACCAAAGAGCCAGT
GTTAATTACTGAGCATGGTAAGCCATCCGCTTATCTCGTTGATGTTGATGACTACGAGTTTATGCAAAATCGTTTAGCTA
TTCTTGAGGGTATTGCACGAGGTGAGCGTGCGCTAGCTGACGGTAAAGTGATAAGCCATGATGAAGCCAAGGACAAAATG
TCAAAATGGCTGAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A4P8FYK5

Antitoxin

Source ID Structure
AlphaFold DB A0A4P8G149

References