Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3662583..3662749 | Replicon | chromosome |
| Accession | NZ_CP017802 | ||
| Organism | Raoultella ornithinolytica strain MG isolate MG01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3662588..3662691 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3662583..3662749 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BK817_RS17515 | 3658178..3659611 | + | 1434 | WP_072046549.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BK817_RS17520 | 3659726..3659965 | + | 240 | WP_004863958.1 | YebV family protein | - |
| BK817_RS17525 | 3660059..3660250 | + | 192 | WP_004863962.1 | YebW family protein | - |
| BK817_RS17530 | 3660256..3660900 | - | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| BK817_RS17535 | 3661043..3662014 | + | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| BK817_RS26370 | 3662135..3662278 | + | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| - | 3662583..3662749 | + | 167 | - | - | Antitoxin |
| - | 3662588..3662691 | - | 104 | - | - | Toxin |
| BK817_RS17540 | 3662848..3663186 | - | 339 | WP_015584012.1 | YebY family protein | - |
| BK817_RS17545 | 3663203..3664072 | - | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| BK817_RS17550 | 3664076..3664450 | - | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| BK817_RS17555 | 3664577..3664807 | + | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| BK817_RS17560 | 3664886..3665545 | + | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| BK817_RS17565 | 3665551..3667611 | - | 2061 | WP_044350916.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T68169 NZ_CP017802:c3662691-3662588 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT68169 NZ_CP017802:3662583-3662749 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
