Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3366141..3366286 | Replicon | chromosome |
| Accession | NZ_CP017777 | ||
| Organism | Klebsiella pneumoniae strain KP36M | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3366148..3366250 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3366141..3366286 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BK002_RS15995 | 3361672..3363105 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BK002_RS16000 | 3363221..3363460 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BK002_RS16005 | 3363558..3363749 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BK002_RS16010 | 3363746..3364399 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| BK002_RS16015 | 3364556..3365524 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| BK002_RS16020 | 3365629..3365772 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 3366141..3366286 | + | 146 | - | - | Antitoxin |
| - | 3366148..3366250 | - | 103 | - | - | Toxin |
| BK002_RS16025 | 3366409..3366747 | - | 339 | WP_002911404.1 | YebY family protein | - |
| BK002_RS16030 | 3366764..3367633 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| BK002_RS16035 | 3367637..3368011 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| BK002_RS16040 | 3368124..3368354 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BK002_RS16045 | 3368433..3369092 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BK002_RS16050 | 3369096..3371156 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T68138 NZ_CP017777:c3366250-3366148 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT68138 NZ_CP017777:3366141-3366286 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
