Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /RES-TIGR02293 |
| Location | 2384405..2385324 | Replicon | chromosome |
| Accession | NZ_CP017671 | ||
| Organism | Providencia rettgeri strain RB151 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | A0A1J0E7D4 |
| Locus tag | RB151_RS10975 | Protein ID | WP_042843809.1 |
| Coordinates | 2384405..2384866 (-) | Length | 154 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | A0A1J0E7A8 |
| Locus tag | RB151_RS10980 | Protein ID | WP_042843808.1 |
| Coordinates | 2384863..2385324 (-) | Length | 154 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RB151_RS10950 | 2379907..2381367 | + | 1461 | WP_042844339.1 | AMP nucleosidase | - |
| RB151_RS10955 | 2381348..2381917 | + | 570 | WP_071548076.1 | GNAT family N-acetyltransferase | - |
| RB151_RS10960 | 2381974..2382396 | + | 423 | WP_042843814.1 | helix-turn-helix domain-containing protein | - |
| RB151_RS10965 | 2382503..2383462 | + | 960 | WP_048607175.1 | acetyl-CoA carboxylase carboxyl transferase subunit alpha | - |
| RB151_RS10970 | 2383506..2384396 | + | 891 | WP_042843811.1 | LysR family transcriptional regulator | - |
| RB151_RS10975 | 2384405..2384866 | - | 462 | WP_042843809.1 | RES domain-containing protein | Toxin |
| RB151_RS10980 | 2384863..2385324 | - | 462 | WP_042843808.1 | DUF2384 domain-containing protein | Antitoxin |
| RB151_RS10985 | 2385414..2385881 | - | 468 | WP_042843807.1 | DUF1456 family protein | - |
| RB151_RS10990 | 2386067..2386381 | - | 315 | WP_042843806.1 | AzlD domain-containing protein | - |
| RB151_RS10995 | 2386378..2387079 | - | 702 | WP_042843804.1 | AzlC family ABC transporter permease | - |
| RB151_RS11000 | 2387766..2388407 | + | 642 | WP_048607183.1 | leucine efflux protein LeuE | - |
| RB151_RS11005 | 2388467..2388925 | - | 459 | WP_042843802.1 | GNAT family N-acetyltransferase | - |
| RB151_RS11010 | 2389344..2389730 | + | 387 | WP_042843801.1 | cytidine deaminase | - |
| RB151_RS11015 | 2389754..2390218 | + | 465 | WP_042843800.1 | NUDIX domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 154 a.a. Molecular weight: 17499.99 Da Isoelectric Point: 6.4846
>T67969 WP_042843809.1 NZ_CP017671:c2384866-2384405 [Providencia rettgeri]
MILYRLIKSDFAHDAWSGQGARLYGGRWNHKGTPAIYTSTSISLAALEILVHINQDTVLNHFTLLSIEINDRYVMKLSVE
HLPDDWQRDPAPTSTMDIGTTWLTNQDSLALIVPSCIIPYEYNAIINPMHPQFQKVTQTIKPLDFAFDPRFNR
MILYRLIKSDFAHDAWSGQGARLYGGRWNHKGTPAIYTSTSISLAALEILVHINQDTVLNHFTLLSIEINDRYVMKLSVE
HLPDDWQRDPAPTSTMDIGTTWLTNQDSLALIVPSCIIPYEYNAIINPMHPQFQKVTQTIKPLDFAFDPRFNR
Download Length: 462 bp
>T67969 NZ_CP017671:c2384866-2384405 [Providencia rettgeri]
ATGATTTTATATCGTTTGATTAAATCTGACTTTGCTCATGATGCGTGGTCCGGTCAAGGTGCTAGGTTATACGGTGGGCG
CTGGAACCATAAAGGTACGCCCGCTATCTACACATCAACAAGTATTTCATTAGCTGCTTTAGAAATTCTCGTTCATATAA
ACCAAGATACCGTGCTTAATCATTTCACTTTATTATCAATTGAGATCAACGATAGGTATGTGATGAAGCTGTCAGTAGAG
CATCTCCCTGATGATTGGCAGCGTGACCCAGCACCTACCTCCACAATGGACATAGGCACAACCTGGTTAACGAACCAAGA
CAGCCTAGCCTTAATTGTCCCTTCTTGTATTATTCCTTATGAATATAATGCCATTATTAACCCTATGCACCCGCAATTTC
AAAAAGTGACCCAAACCATTAAGCCCCTCGACTTTGCTTTTGACCCACGATTTAACCGGTAG
ATGATTTTATATCGTTTGATTAAATCTGACTTTGCTCATGATGCGTGGTCCGGTCAAGGTGCTAGGTTATACGGTGGGCG
CTGGAACCATAAAGGTACGCCCGCTATCTACACATCAACAAGTATTTCATTAGCTGCTTTAGAAATTCTCGTTCATATAA
ACCAAGATACCGTGCTTAATCATTTCACTTTATTATCAATTGAGATCAACGATAGGTATGTGATGAAGCTGTCAGTAGAG
CATCTCCCTGATGATTGGCAGCGTGACCCAGCACCTACCTCCACAATGGACATAGGCACAACCTGGTTAACGAACCAAGA
CAGCCTAGCCTTAATTGTCCCTTCTTGTATTATTCCTTATGAATATAATGCCATTATTAACCCTATGCACCCGCAATTTC
AAAAAGTGACCCAAACCATTAAGCCCCTCGACTTTGCTTTTGACCCACGATTTAACCGGTAG
Antitoxin
Download Length: 154 a.a. Molecular weight: 17086.57 Da Isoelectric Point: 9.9812
>AT67969 WP_042843808.1 NZ_CP017671:c2385324-2384863 [Providencia rettgeri]
MRNYIPALPTQPTTPPFKPLWRFAGLPAERGIELTHFLRQGLSVTVLDNIQEWSGISKSELLRISGINERNVARRRNAGQ
PLNADESERIARLVRVFDAAVRLFNGDKSMASDWLNHPVKGLGHTRPIELIATESGALEVIDLIGRIEHGVFS
MRNYIPALPTQPTTPPFKPLWRFAGLPAERGIELTHFLRQGLSVTVLDNIQEWSGISKSELLRISGINERNVARRRNAGQ
PLNADESERIARLVRVFDAAVRLFNGDKSMASDWLNHPVKGLGHTRPIELIATESGALEVIDLIGRIEHGVFS
Download Length: 462 bp
>AT67969 NZ_CP017671:c2385324-2384863 [Providencia rettgeri]
ATGAGAAACTATATTCCAGCACTCCCAACCCAACCCACCACGCCACCTTTTAAGCCCCTATGGCGCTTTGCTGGCCTACC
CGCAGAACGTGGTATCGAACTCACTCATTTCCTACGACAAGGTCTTTCCGTTACGGTGTTAGACAACATTCAAGAATGGT
CTGGCATCAGCAAATCTGAATTACTCCGTATTTCAGGTATTAATGAGCGCAATGTGGCAAGGCGTAGAAATGCAGGTCAG
CCACTCAATGCCGATGAAAGTGAAAGAATTGCTCGCTTAGTGCGTGTATTTGATGCCGCTGTACGCTTATTCAATGGTGA
TAAGTCAATGGCAAGTGATTGGTTGAATCACCCCGTGAAAGGCTTAGGACATACGCGCCCTATAGAGTTGATTGCCACTG
AAAGTGGTGCTCTTGAAGTTATCGACCTTATTGGCCGCATTGAACACGGTGTTTTTTCATGA
ATGAGAAACTATATTCCAGCACTCCCAACCCAACCCACCACGCCACCTTTTAAGCCCCTATGGCGCTTTGCTGGCCTACC
CGCAGAACGTGGTATCGAACTCACTCATTTCCTACGACAAGGTCTTTCCGTTACGGTGTTAGACAACATTCAAGAATGGT
CTGGCATCAGCAAATCTGAATTACTCCGTATTTCAGGTATTAATGAGCGCAATGTGGCAAGGCGTAGAAATGCAGGTCAG
CCACTCAATGCCGATGAAAGTGAAAGAATTGCTCGCTTAGTGCGTGTATTTGATGCCGCTGTACGCTTATTCAATGGTGA
TAAGTCAATGGCAAGTGATTGGTTGAATCACCCCGTGAAAGGCTTAGGACATACGCGCCCTATAGAGTTGATTGCCACTG
AAAGTGGTGCTCTTGAAGTTATCGACCTTATTGGCCGCATTGAACACGGTGTTTTTTCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1J0E7D4 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1J0E7A8 |