Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1979132..1979287 | Replicon | chromosome |
| Accession | NZ_CP017662 | ||
| Organism | Cronobacter sp. JZ38 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1979167..1979270 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1979132..1979287 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJP61_RS09335 | 1974254..1976317 | + | 2064 | WP_171998188.1 | oligopeptidase B | - |
| BJP61_RS09340 | 1976314..1976976 | - | 663 | WP_075193546.1 | exodeoxyribonuclease X | - |
| BJP61_RS09345 | 1977052..1977282 | - | 231 | WP_007734209.1 | DNA polymerase III subunit theta | - |
| BJP61_RS09350 | 1977429..1977803 | + | 375 | WP_171998189.1 | CopC domain-containing protein YobA | - |
| BJP61_RS09355 | 1977808..1978677 | + | 870 | WP_171998190.1 | copper homeostasis membrane protein CopD | - |
| BJP61_RS09360 | 1978692..1979030 | + | 339 | WP_038862394.1 | YebY family protein | - |
| - | 1979132..1979287 | - | 156 | - | - | Antitoxin |
| - | 1979167..1979270 | + | 104 | - | - | Toxin |
| BJP61_RS09365 | 1980006..1980650 | + | 645 | WP_171998191.1 | metallophosphoesterase | - |
| BJP61_RS09370 | 1980651..1980842 | - | 192 | WP_038862398.1 | YebW family protein | - |
| BJP61_RS09375 | 1980953..1981192 | - | 240 | WP_007698851.1 | YebV family protein | - |
| BJP61_RS09380 | 1981303..1982838 | - | 1536 | WP_171999293.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T67916 NZ_CP017662:1979167-1979270 [Cronobacter sp. JZ38]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 156 bp
>AT67916 NZ_CP017662:c1979287-1979132 [Cronobacter sp. JZ38]
CTGCCTTTTCTCAGGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGT
GCGCTAAAAGTTGGCATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
CTGCCTTTTCTCAGGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGT
GCGCTAAAAGTTGGCATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
