Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1886060..1886142 | Replicon | chromosome |
| Accession | NZ_CP017638 | ||
| Organism | Dickeya dianthicola RNS04.9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1886062..1886142 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1886060..1886142 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDI_RS08835 | 1881500..1881724 | - | 225 | WP_024105836.1 | hypothetical protein | - |
| DDI_RS08840 | 1882061..1882462 | + | 402 | WP_024105837.1 | hypothetical protein | - |
| DDI_RS08850 | 1883008..1883613 | + | 606 | WP_024105838.1 | hypothetical protein | - |
| DDI_RS08855 | 1883753..1883986 | + | 234 | WP_024105839.1 | hypothetical protein | - |
| DDI_RS21700 | 1884210..1884368 | - | 159 | WP_162928372.1 | hypothetical protein | - |
| DDI_RS21705 | 1884876..1885382 | + | 507 | WP_144414575.1 | hypothetical protein | - |
| - | 1886060..1886142 | + | 83 | - | - | Antitoxin |
| - | 1886062..1886142 | - | 81 | - | - | Toxin |
| DDI_RS08875 | 1886312..1886650 | - | 339 | WP_024105843.1 | YebY family protein | - |
| DDI_RS08880 | 1887097..1887540 | + | 444 | WP_024105844.1 | hypothetical protein | - |
| DDI_RS08885 | 1887872..1888120 | + | 249 | WP_024105845.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| DDI_RS08890 | 1888382..1889656 | - | 1275 | WP_024105846.1 | YeaH/YhbH family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T67876 NZ_CP017638:c1886142-1886062 [Dickeya dianthicola RNS04.9]
AATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT67876 NZ_CP017638:1886060-1886142 [Dickeya dianthicola RNS04.9]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
