Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YafQ-DinJ |
| Location | 1408524..1409076 | Replicon | chromosome |
| Accession | NZ_CP017634 | ||
| Organism | Candidatus Formimonas warabiya strain DCMF | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | DCMF_RS06695 | Protein ID | WP_148133708.1 |
| Coordinates | 1408801..1409076 (+) | Length | 92 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | DCMF_RS06690 | Protein ID | WP_214659386.1 |
| Coordinates | 1408524..1408808 (+) | Length | 95 a.a. |
Genomic Context
Location: 1408524..1408808 (285 bp)
Type: Antitoxin
Protein ID: WP_214659386.1
Type: Antitoxin
Protein ID: WP_214659386.1
Location: 1408801..1409076 (276 bp)
Type: Toxin
Protein ID: WP_148133708.1
Type: Toxin
Protein ID: WP_148133708.1
Location: 1407853..1408125 (273 bp)
Type: Others
Protein ID: WP_148133705.1
Type: Others
Protein ID: WP_148133705.1
Location: 1408118..1408360 (243 bp)
Type: Others
Protein ID: WP_148133706.1
Type: Others
Protein ID: WP_148133706.1
Location: 1409284..1409712 (429 bp)
Type: Others
Protein ID: WP_148133709.1
Type: Others
Protein ID: WP_148133709.1
Location: 1409705..1410025 (321 bp)
Type: Others
Protein ID: WP_148133710.1
Type: Others
Protein ID: WP_148133710.1
Location: 1410403..1411614 (1212 bp)
Type: Others
Protein ID: WP_148133711.1
Type: Others
Protein ID: WP_148133711.1
Location: 1411614..1412834 (1221 bp)
Type: Others
Protein ID: WP_236860208.1
Type: Others
Protein ID: WP_236860208.1
Location: 1412838..1413713 (876 bp)
Type: Others
Protein ID: WP_236860209.1
Type: Others
Protein ID: WP_236860209.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DCMF_RS06680 (DCMF_06675) | 1407853..1408125 | - | 273 | WP_148133705.1 | Txe/YoeB family addiction module toxin | - |
| DCMF_RS06685 (DCMF_06680) | 1408118..1408360 | - | 243 | WP_148133706.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| DCMF_RS06690 (DCMF_06685) | 1408524..1408808 | + | 285 | WP_214659386.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| DCMF_RS06695 (DCMF_06690) | 1408801..1409076 | + | 276 | WP_148133708.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
| DCMF_RS06700 (DCMF_06695) | 1409284..1409712 | - | 429 | WP_148133709.1 | HEPN domain-containing protein | - |
| DCMF_RS06705 (DCMF_06700) | 1409705..1410025 | - | 321 | WP_148133710.1 | nucleotidyltransferase domain-containing protein | - |
| DCMF_RS06710 (DCMF_06710) | 1410403..1411614 | - | 1212 | WP_148133711.1 | DUF2791 family P-loop domain-containing protein | - |
| DCMF_RS06715 (DCMF_06715) | 1411614..1412834 | - | 1221 | WP_236860208.1 | DUF2791 family P-loop domain-containing protein | - |
| DCMF_RS06720 (DCMF_06720) | 1412838..1413713 | - | 876 | WP_236860209.1 | hypothetical protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10597.30 Da Isoelectric Point: 8.4985
>T67855 WP_148133708.1 NZ_CP017634:1408801-1409076 [Candidatus Formimonas warabiya]
MYEIKPTSRFKRDLKIIQRRGYDINLLTAVIQTLAAGEPLAEKHKDHALNGVWTKYRECHVTPDWLLIYKVENDILVLTL
TRTGTHSDLFC
MYEIKPTSRFKRDLKIIQRRGYDINLLTAVIQTLAAGEPLAEKHKDHALNGVWTKYRECHVTPDWLLIYKVENDILVLTL
TRTGTHSDLFC
Download Length: 276 bp
>T67855 NZ_CP017634:1408801-1409076 [Candidatus Formimonas warabiya]
ATGTATGAGATAAAACCAACCAGTCGTTTCAAGCGTGATTTGAAAATCATCCAGCGCAGAGGTTATGATATTAACCTGCT
CACAGCGGTTATCCAAACATTGGCTGCCGGGGAGCCTCTGGCAGAAAAACATAAAGATCATGCTTTGAACGGCGTTTGGA
CAAAGTACAGGGAATGCCACGTCACACCGGATTGGCTGCTCATTTATAAGGTGGAAAATGACATCCTTGTTCTCACTCTT
ACCCGTACAGGAACACACAGTGATTTATTTTGTTAA
ATGTATGAGATAAAACCAACCAGTCGTTTCAAGCGTGATTTGAAAATCATCCAGCGCAGAGGTTATGATATTAACCTGCT
CACAGCGGTTATCCAAACATTGGCTGCCGGGGAGCCTCTGGCAGAAAAACATAAAGATCATGCTTTGAACGGCGTTTGGA
CAAAGTACAGGGAATGCCACGTCACACCGGATTGGCTGCTCATTTATAAGGTGGAAAATGACATCCTTGTTCTCACTCTT
ACCCGTACAGGAACACACAGTGATTTATTTTGTTAA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10647.27 Da Isoelectric Point: 4.6151
>AT67855 WP_214659386.1 NZ_CP017634:1408524-1408808 [Candidatus Formimonas warabiya]
IMANTTNISIRMDVELKKQAEQLFNELGMSMTTAFNIFLRQAVRQQRIPFDIALETPNAETIAAIEEAERISRDPSVKGY
TDASKMMKELLPDV
IMANTTNISIRMDVELKKQAEQLFNELGMSMTTAFNIFLRQAVRQQRIPFDIALETPNAETIAAIEEAERISRDPSVKGY
TDASKMMKELLPDV
Download Length: 285 bp
>AT67855 NZ_CP017634:1408524-1408808 [Candidatus Formimonas warabiya]
ATTATGGCTAATACAACGAATATAAGCATCCGCATGGACGTTGAGCTTAAAAAACAGGCTGAGCAGCTTTTCAACGAGCT
CGGTATGAGCATGACGACGGCCTTTAATATTTTTCTGCGTCAAGCTGTGCGTCAGCAGAGAATTCCCTTCGATATTGCTC
TAGAGACTCCCAACGCCGAGACAATCGCTGCCATCGAGGAAGCTGAACGCATCAGTCGCGATCCTTCGGTCAAAGGCTAT
ACTGACGCAAGTAAAATGATGAAGGAGCTTTTGCCCGATGTATGA
ATTATGGCTAATACAACGAATATAAGCATCCGCATGGACGTTGAGCTTAAAAAACAGGCTGAGCAGCTTTTCAACGAGCT
CGGTATGAGCATGACGACGGCCTTTAATATTTTTCTGCGTCAAGCTGTGCGTCAGCAGAGAATTCCCTTCGATATTGCTC
TAGAGACTCCCAACGCCGAGACAATCGCTGCCATCGAGGAAGCTGAACGCATCAGTCGCGATCCTTCGGTCAAAGGCTAT
ACTGACGCAAGTAAAATGATGAAGGAGCTTTTGCCCGATGTATGA