Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/-
Location 2404547..2405076 Replicon chromosome
Accession NZ_CP017598
Organism Mycobacterium tuberculosis strain Beijing-like/1104

Toxin (Protein)


Gene name parE Uniprot ID G0TMR4
Locus tag BJM04_RS11670 Protein ID WP_003411124.1
Coordinates 2404547..2404864 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID P9WJ74
Locus tag BJM04_RS11675 Protein ID WP_003411127.1
Coordinates 2404861..2405076 (-) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BJM04_RS11640 2399684..2400760 + 1077 WP_003411110.1 hypothetical protein -
BJM04_RS11645 2400757..2401038 + 282 WP_003411112.1 hypothetical protein -
BJM04_RS11650 2401074..2402147 + 1074 WP_003901338.1 quinone-dependent dihydroorotate dehydrogenase -
BJM04_RS11655 2402152..2402682 - 531 WP_003411119.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
BJM04_RS11660 2402730..2404076 - 1347 WP_003411121.1 M20/M25/M40 family metallo-hydrolase -
BJM04_RS11670 2404547..2404864 - 318 WP_003411124.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BJM04_RS11675 2404861..2405076 - 216 WP_003411127.1 antitoxin ParD2 Antitoxin
BJM04_RS11680 2405331..2406389 + 1059 WP_003411129.1 hypothetical protein -
BJM04_RS11685 2406519..2406875 - 357 WP_003411130.1 hypothetical protein -
BJM04_RS11690 2406970..2407752 - 783 WP_003411131.1 cell wall synthesis protein Wag31 -
BJM04_RS11695 2408020..2408310 - 291 WP_003900476.1 YggT family protein -
BJM04_RS11700 2408472..2409128 - 657 WP_003411133.1 cell division protein SepF -
BJM04_RS11705 2409190..2409969 - 780 WP_015575160.1 YggS family pyridoxal phosphate-dependent enzyme -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Conserved hypothetical protein CHP02574, addiction module

(11-69)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12312.88 Da        Isoelectric Point: 6.4831

>T67778 WP_003411124.1 NZ_CP017598:c2404864-2404547 [Mycobacterium tuberculosis]
MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAI
DILAVRHGMENPNAVEAEISGRTFE

Download         Length: 318 bp

>T67778 NZ_CP017598:c2404864-2404547 [Mycobacterium tuberculosis]
ATGACGCGCAGGCTGCGCGTCCATAACGGGGTTGAAGACGACCTATTCGAGGCGTTTTCCTACTACGCGGACGCGGCGCC
AGATCAGATCGATCGGCTTTACAACTTGTTTGTCGATGCCGTGACGAAGCGGATTCCGCAGGCTCCGAACGCGTTTGCGC
CGTTATTCAAGCACTATCGACACATCTACCTCCGGCCCTTCAGGTACTACGTTGCCTATCGGACGACCGACGAGGCTATC
GACATACTGGCTGTTCGGCACGGAATGGAGAACCCGAACGCGGTCGAGGCTGAGATCTCTGGCCGCACCTTCGAGTGA

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7880.70 Da        Isoelectric Point: 4.4055

>AT67778 WP_003411127.1 NZ_CP017598:c2405076-2404861 [Mycobacterium tuberculosis]
VVVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTIDDFDKRIRARLG

Download         Length: 216 bp

>AT67778 NZ_CP017598:c2405076-2404861 [Mycobacterium tuberculosis]
GTGGTGGTCAACCGGGCATTGCTGGCGAGCGTCGACGCACTGTCGCGTGATGAGCAGATTGAGCTCGTCGAGCACATCAA
CGGAAACCTAGCCGAGGGCATGCATATCAGCGAGGCCAACCAGGCGCTCATCGAAGCGCGGGCCAATGACACCGACGATG
CTCATTGGTCCACCATTGATGACTTCGACAAGCGGATCCGCGCCCGGCTCGGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TMR4

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4FAJ4

References