67586

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 1946419..1947032 Replicon chromosome
Accession NZ_CP017595
Organism Mycobacterium tuberculosis strain Beijing-like/38774

Toxin (Protein)


Gene name vapC Uniprot ID P9WFA2
Locus tag BJM01_RS09340 Protein ID WP_003408465.1
Coordinates 1946419..1946808 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ52
Locus tag BJM01_RS09345 Protein ID WP_003408469.1
Coordinates 1946805..1947032 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BJM01_RS09310 1942048..1942962 + 915 WP_003898985.1 3-hydroxyacyl-CoA dehydrogenase family protein -
BJM01_RS09315 1942965..1943795 + 831 WP_003408448.1 cyclase family protein -
BJM01_RS09320 1943795..1944145 + 351 WP_003898986.1 cupin domain-containing protein -
BJM01_RS09325 1944198..1945016 + 819 WP_003408456.1 3-keto-5-aminohexanoate cleavage protein -
BJM01_RS09330 1945030..1945809 + 780 WP_003408460.1 IclR family transcriptional regulator -
BJM01_RS09340 1946419..1946808 - 390 WP_003408465.1 PIN domain-containing protein Toxin
BJM01_RS09345 1946805..1947032 - 228 WP_003408469.1 antitoxin Antitoxin
BJM01_RS09350 1947250..1948734 + 1485 WP_003408473.1 carboxylase -
BJM01_RS09355 1948731..1949978 + 1248 WP_031709373.1 serine hydrolase -
BJM01_RS09360 1950021..1950440 - 420 WP_003408483.1 hypothetical protein -
BJM01_RS09365 1950430..1951140 - 711 WP_003408486.1 winged helix-turn-helix transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-116)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 13817.98 Da        Isoelectric Point: 7.0612

>T67586 WP_003408465.1 NZ_CP017595:c1946808-1946419 [Mycobacterium tuberculosis]
VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFT
QRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELVA

Download         Length: 390 bp

>T67586 NZ_CP017595:c1946808-1946419 [Mycobacterium tuberculosis]
GTGATCGTGTTGGACGCCTCGGCGGCCGTCGAGCTCATGCTCACGACGCCGGCGGGTGCGGCGGTCGCCCGGCGCTTGCG
GGGCGAAACCGTGCACGCCCCTGCACATTTCGATGTCGAGGTGATCGGGGCGATACGTCAAGCGGTCGTGCGTCAGCTGA
TCAGCGATCATGAAGGACTCGTCGTGGTTGTCAACTTCCTTAGCCTGCCCGTTCGGCGTTGGCCGTTAAAGCCATTCACC
CAGCGTGCCTACCAACTTCGGTCCACTCATACCGTGGCCGATGGAGCCTACGTCGCCCTCGCCGAGGGCCTCGGCGTACC
GCTTATCACTTGCGACGGGCGACTTGCCCAATCCCATGGCCATAATGCGGAGATCGAGCTTGTCGCCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8226.39 Da        Isoelectric Point: 4.3313

>AT67586 WP_003408469.1 NZ_CP017595:c1947032-1946805 [Mycobacterium tuberculosis]
MSAMVQIRNVPDELLHELKARAAAQRMSLSDFLLARLAEIAEEPALDDVLDRLAALPRRDLGASAAELVDEARSE

Download         Length: 228 bp

>AT67586 NZ_CP017595:c1947032-1946805 [Mycobacterium tuberculosis]
ATGTCCGCCATGGTTCAGATCCGCAACGTTCCCGACGAGCTTCTCCACGAGCTGAAGGCCCGCGCAGCGGCGCAACGGAT
GAGCCTGAGCGATTTCCTCCTAGCACGGCTTGCCGAGATCGCGGAAGAACCGGCCCTCGACGACGTTCTCGACCGTCTAG
CGGCACTGCCGCGCCGGGATCTCGGCGCGAGCGCAGCCGAGCTTGTTGACGAGGCTCGATCTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BUI9

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4FAN9

References