Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tacT-ataR/DUF1778(antitoxin)
Location 104435..105192 Replicon plasmid pDSJ09
Accession NZ_CP017590
Organism Pantoea stewartii subsp. stewartii DC283

Toxin (Protein)


Gene name tacT Uniprot ID -
Locus tag DSJ_RS25290 Protein ID WP_006122261.1
Coordinates 104710..105192 (+) Length 161 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID A0A7U5G7A5
Locus tag DSJ_RS25285 Protein ID WP_044243377.1
Coordinates 104435..104719 (+) Length 95 a.a.

Genomic Context

DSJ_RS25275DSJ_RS25285DSJ_RS25290DSJ_RS25300DSJ_RS25315DSJ_RS25325DSJ_RS25245DSJ_RS25250DSJ_RS25255DSJ_RS25260DSJ_RS25265DSJ_RS25270DSJ_RS25280DSJ_RS28145DSJ_RS25295DSJ_RS25305DSJ_RS25310DSJ_RS25320
Location: 103219..103569 (351 bp)
Type: Others
Protein ID: WP_044243379.1
Location: 104435..104719 (285 bp)
Type: Antitoxin
Protein ID: WP_044243377.1
Location: 104710..105192 (483 bp)
Type: Toxin
Protein ID: WP_006122261.1
Location: 105921..106334 (414 bp)
Type: Others
Protein ID: Protein_112
Location: 107920..108540 (621 bp)
Type: Others
Protein ID: WP_006122260.1
Location: 109503..110126 (624 bp)
Type: Others
Protein ID: WP_071988728.1
Location: 99764..100111 (348 bp)
Type: Others
Protein ID: WP_006117592.1
Location: 100108..100737 (630 bp)
Type: Others
Protein ID: WP_044241253.1
Location: 100768..101442 (675 bp)
Type: Others
Protein ID: WP_006122268.1
Location: 101429..101995 (567 bp)
Type: Others
Protein ID: WP_006122267.1
Location: 102017..102322 (306 bp)
Type: Others
Protein ID: WP_006122266.1
Location: 102341..102745 (405 bp)
Type: Others
Protein ID: WP_006122265.1
Location: 103556..103804 (249 bp)
Type: Others
Protein ID: WP_006122263.1
Location: 103778..103924 (147 bp)
Type: Others
Protein ID: Protein_108
Location: 105272..105937 (666 bp)
Type: Others
Protein ID: WP_044243375.1
Location: 106542..106769 (228 bp)
Type: Others
Protein ID: WP_020314634.1
Location: 106814..107440 (627 bp)
Type: Others
Protein ID: WP_044243371.1
Location: 108944..109417 (474 bp)
Type: Others
Protein ID: Protein_116
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DSJ_RS2524599764..100111-348WP_006117592.1IS66 family insertion sequence element accessory protein TnpB-
DSJ_RS25250100108..100737-630WP_044241253.1IS66 family insertion sequence hypothetical protein-
DSJ_RS25255100768..101442-675WP_006122268.1type-F conjugative transfer system secretin TraK-
DSJ_RS25260101429..101995-567WP_006122267.1type IV conjugative transfer system protein TraE-
DSJ_RS25265102017..102322-306WP_006122266.1type IV conjugative transfer system protein TraL-
DSJ_RS25270102341..102745-405WP_006122265.1conjugal transfer protein TraA-
DSJ_RS25275103219..103569+351WP_044243379.1hypothetical protein-
DSJ_RS25280103556..103804-249WP_006122263.1TraY domain-containing protein-
DSJ_RS28145103778..103924-147Protein_108TraY domain-containing protein-
DSJ_RS25285104435..104719+285WP_044243377.1DUF1778 domain-containing proteinAntitoxin
DSJ_RS25290104710..105192+483WP_006122261.1GNAT family N-acetyltransferaseToxin
DSJ_RS25295105272..105937-666WP_044243375.1LuxR C-terminal-related transcriptional regulator-
DSJ_RS25300105921..106334+414Protein_112DUF4113 domain-containing protein-
DSJ_RS25305106542..106769-228WP_020314634.1hypothetical protein-
DSJ_RS25310106814..107440-627WP_044243371.1ParA family protein-
DSJ_RS25315107920..108540+621WP_006122260.1recombinase family protein-
DSJ_RS25320108944..109417-474Protein_116IS91 family transposase-
DSJ_RS25325109503..110126+624WP_071988728.1IS66 family insertion sequence hypothetical protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid--1..132938132938


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-114)


Sequences

Toxin        


Download         Length: 161 a.a.        Molecular weight: 20654.05 Da        Isoelectric Point: 13.0041

>T67435 WP_006122261.1 NZ_CP017590:104710-105192 [Pantoea stewartii subsp. stewartii DC283]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
K

Download         Length: 483 bp

>T67435 NZ_CP017590:104710-105192 [Pantoea stewartii subsp. stewartii DC283]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 12194.55 Da        Isoelectric Point: 12.7731

>AT67435 WP_044243377.1 NZ_CP017590:104435-104719 [Pantoea stewartii subsp. stewartii DC283]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKK

Download         Length: 285 bp

>AT67435 NZ_CP017590:104435-104719 [Pantoea stewartii subsp. stewartii DC283]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
AlphaFold DBA0A7U5G7A5

References