Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 43091..43671 Replicon plasmid pDSJ07
Accession NZ_CP017588
Organism Pantoea stewartii subsp. stewartii DC283

Toxin (Protein)


Gene name parE Uniprot ID H3RG02
Locus tag DSJ_RS23950 Protein ID WP_006120406.1
Coordinates 43091..43396 (-) Length 102 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A7U5G6Q4
Locus tag DSJ_RS23955 Protein ID WP_044242376.1
Coordinates 43384..43671 (-) Length 96 a.a.

Genomic Context

DSJ_RS23925DSJ_RS23960DSJ_RS23970DSJ_RS23975DSJ_RS23930DSJ_RS23935DSJ_RS23945DSJ_RS23950DSJ_RS23955DSJ_RS23965
Location: 38695..39678 (984 bp)
Type: Others
Protein ID: WP_006120403.1
Location: 43915..44214 (300 bp)
Type: Others
Protein ID: WP_167387070.1
Location: 46229..46858 (630 bp)
Type: Others
Protein ID: WP_044241253.1
Location: 46855..47202 (348 bp)
Type: Others
Protein ID: WP_006117592.1
Location: 39701..40036 (336 bp)
Type: Others
Protein ID: WP_044242374.1
Location: 40033..40740 (708 bp)
Type: Others
Protein ID: WP_044242375.1
Location: 41943..42809 (867 bp)
Type: Others
Protein ID: WP_006120404.1
Location: 43091..43396 (306 bp)
Type: Toxin
Protein ID: WP_006120406.1
Location: 43384..43671 (288 bp)
Type: Antitoxin
Protein ID: WP_044242376.1
Location: 44247..46155 (1909 bp)
Type: Others
Protein ID: Protein_47
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DSJ_RS2392538695..39678+984WP_006120403.1recombinase family protein-
DSJ_RS2393039701..40036-336WP_044242374.1hypothetical protein-
DSJ_RS2393540033..40740-708WP_044242375.1ParA family protein-
DSJ_RS2394541943..42809-867WP_006120404.1incFII family plasmid replication initiator RepA-
DSJ_RS2395043091..43396-306WP_006120406.1type II toxin-antitoxin system RelE/ParE family toxinToxin
DSJ_RS2395543384..43671-288WP_044242376.1ribbon-helix-helix protein, CopG familyAntitoxin
DSJ_RS2396043915..44214+300WP_167387070.1PAS domain-containing protein-
DSJ_RS2396544247..46155-1909Protein_47Tn3 family transposase-
DSJ_RS2397046229..46858+630WP_044241253.1IS66 family insertion sequence hypothetical protein-
DSJ_RS2397546855..47202+348WP_006117592.1IS66 family insertion sequence element accessory protein TnpB-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid--1..6548365483


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 15030.03 Da        Isoelectric Point: 5.5500

>T67432 WP_006120406.1 NZ_CP017588:c43396-43091 [Pantoea stewartii subsp. stewartii DC283]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFF

Download         Length: 306 bp

>T67432 NZ_CP017588:c43396-43091 [Pantoea stewartii subsp. stewartii DC283]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 14146.97 Da        Isoelectric Point: 5.5500

>AT67432 WP_044242376.1 NZ_CP017588:c43671-43384 [Pantoea stewartii subsp. stewartii DC283]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFF

Download         Length: 288 bp

>AT67432 NZ_CP017588:c43671-43384 [Pantoea stewartii subsp. stewartii DC283]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBH3RG02

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A7U5G6Q4

References