Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/HicB(antitoxin)
Location 1128837..1129477 Replicon chromosome
Accession NZ_CP017519
Organism Mannheimia haemolytica strain 22549

Toxin (Protein)


Gene name hicA Uniprot ID A0A378NFX7
Locus tag BG610_RS05770 Protein ID WP_006250075.1
Coordinates 1129295..1129477 (-) Length 61 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID A0A378NFW9
Locus tag BG610_RS05765 Protein ID WP_006250074.1
Coordinates 1128837..1129256 (-) Length 140 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BG610_RS05745 1124972..1125778 + 807 WP_006248821.1 tryptophan synthase subunit alpha -
BG610_RS05750 1125828..1127234 + 1407 WP_006253513.1 YdgA family protein -
BG610_RS05755 1127301..1128341 - 1041 WP_015587043.1 IS481 family transposase -
BG610_RS05765 1128837..1129256 - 420 WP_006250074.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
BG610_RS05770 1129295..1129477 - 183 WP_006250075.1 type II toxin-antitoxin system HicA family toxin Toxin
BG610_RS05775 1129609..1130094 - 486 WP_015484250.1 hypothetical protein -
BG610_RS05780 1130099..1130479 - 381 WP_006248823.1 hypothetical protein -
BG610_RS05785 1130554..1131237 - 684 WP_006248824.1 helix-turn-helix transcriptional regulator -
BG610_RS05790 1131368..1131568 + 201 WP_006248825.1 helix-turn-helix domain-containing protein -
BG610_RS13910 1131589..1132656 + 1068 WP_006253284.1 hypothetical protein -
BG610_RS13915 1132666..1132824 + 159 WP_006247809.1 hypothetical protein -
BG610_RS05805 1132884..1133924 - 1041 WP_015587043.1 IS481 family transposase -
BG610_RS05815 1134041..1134340 - 300 WP_006247810.1 XRE family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1071876..1138281 66405
- inside IScluster/Tn - - 1127301..1133924 6623


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(3-58)

Antitoxin

HicB-like antitoxin of toxin-antitoxin system

(4-96)


Sequences

Toxin        


Download         Length: 61 a.a.        Molecular weight: 6933.03 Da        Isoelectric Point: 10.3446

>T67159 WP_006250075.1 NZ_CP017519:c1129477-1129295 [Mannheimia haemolytica]
MKYSEFLRYLLAQGCEIENHRRGSHRKVTLNGKQSVFPYHGSKEIGTGLVNKIKKDLDLK

Download         Length: 183 bp

>T67159 NZ_CP017519:c1129477-1129295 [Mannheimia haemolytica]
ATGAAATACAGCGAGTTCCTGAGGTACTTACTTGCTCAAGGTTGCGAAATTGAAAACCATAGGCGAGGCAGTCATCGAAA
GGTAACACTAAACGGAAAACAATCGGTTTTTCCTTATCACGGGAGCAAAGAGATTGGTACAGGTTTAGTAAATAAGATTA
AGAAAGACTTAGATCTTAAATAA

Antitoxin


Download         Length: 140 a.a.        Molecular weight: 15938.30 Da        Isoelectric Point: 4.6963

>AT67159 WP_006250074.1 NZ_CP017519:c1129256-1128837 [Mannheimia haemolytica]
MLRYPVEITPDDNGTYLVTCPDIPEMASVGEDLEEALLEAQDGLATALEFYFDDRREIPMPSPIKEGQHTVNLTVLQSMK
VFLLNEMIKQGVRKAEMARRLDVHLPQIDRLLDFNHSTKVEFVEKAYGKLNQHFTILPH

Download         Length: 420 bp

>AT67159 NZ_CP017519:c1129256-1128837 [Mannheimia haemolytica]
ATGTTACGCTACCCAGTTGAAATTACCCCTGATGATAACGGCACATATCTTGTGACTTGCCCTGATATTCCTGAAATGGC
AAGCGTAGGTGAGGACTTAGAAGAAGCCCTATTAGAAGCACAAGATGGCTTAGCCACAGCCCTTGAATTCTATTTTGATG
ATAGACGAGAAATACCAATGCCAAGCCCAATTAAAGAGGGACAACATACGGTTAATCTTACCGTGCTGCAATCAATGAAA
GTATTTCTCTTAAATGAAATGATTAAACAAGGTGTACGCAAAGCAGAAATGGCAAGACGATTAGATGTACACTTACCACA
GATAGATCGCCTATTAGATTTTAATCATTCCACAAAAGTAGAATTTGTTGAGAAAGCCTATGGTAAGCTAAATCAACACT
TTACTATTCTCCCTCACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A378NFX7

Antitoxin

Source ID Structure
AlphaFold DB A0A378NFW9

References