Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pemIK/PRK09812-MazE
Location 2378029..2378618 Replicon chromosome
Accession NZ_CP017493
Organism Mannheimia haemolytica strain 38120

Toxin (Protein)


Gene name pemK Uniprot ID A0A248ZY19
Locus tag BG568_RS12100 Protein ID WP_006248516.1
Coordinates 2378286..2378618 (+) Length 111 a.a.

Antitoxin (Protein)


Gene name pemI Uniprot ID A0A248ZX26
Locus tag BG568_RS12095 Protein ID WP_006248517.1
Coordinates 2378029..2378289 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BG568_RS12070 2373208..2374353 - 1146 WP_006251102.1 FMN-dependent L-lactate dehydrogenase LldD -
BG568_RS12075 2374965..2375609 + 645 WP_006248521.1 RNA pyrophosphohydrolase -
BG568_RS12080 2375611..2376399 + 789 WP_006248520.1 sulfite exporter TauE/SafE family protein -
BG568_RS12085 2376407..2377204 + 798 WP_006251103.1 prolipoprotein diacylglyceryl transferase -
BG568_RS12090 2377291..2377959 + 669 WP_006248518.1 phosphoglycolate phosphatase -
BG568_RS12095 2378029..2378289 + 261 WP_006248517.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
BG568_RS12100 2378286..2378618 + 333 WP_006248516.1 type II toxin-antitoxin system PemK/MazF family toxin Toxin
BG568_RS12105 2378745..2379776 + 1032 WP_006248514.1 tryptophan--tRNA ligase -
BG568_RS12110 2379840..2380595 - 756 WP_006248513.1 M48 family metallopeptidase -
BG568_RS12115 2380651..2381178 - 528 WP_006248512.1 inorganic diphosphatase -
BG568_RS12135 2381758..2382792 + 1035 WP_006248509.1 endolytic transglycosylase MltG -
BG568_RS12140 2382803..2383423 + 621 WP_006248508.1 dTMP kinase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(2-109)

Antitoxin

SpoVT-AbrB domain

(7-48)


Sequences

Toxin        


Download         Length: 111 a.a.        Molecular weight: 12007.94 Da        Isoelectric Point: 6.4597

>T66981 WP_006248516.1 NZ_CP017493:2378286-2378618 [Mannheimia haemolytica]
MKRGDIYWLDLDPTLGHEQSGFRPVVIVSATAFNLASKLPVVVPITNGGAFAERLGFAVSLKDAGLKTTGIIRCDQPRTV
DIAQRHGKFIEALPESLLDEIMARVSVIFE

Download         Length: 333 bp

>T66981 NZ_CP017493:2378286-2378618 [Mannheimia haemolytica]
ATGAAACGTGGCGATATTTACTGGCTCGATCTTGATCCAACCTTAGGACACGAACAATCAGGCTTCCGCCCCGTTGTAAT
TGTTTCCGCAACTGCATTTAATCTAGCCAGTAAACTGCCTGTGGTTGTGCCGATTACTAACGGTGGAGCTTTTGCTGAAA
GACTGGGCTTTGCCGTTTCATTAAAAGATGCCGGCTTAAAAACAACAGGGATTATTCGATGCGATCAACCTCGCACAGTC
GATATTGCACAACGCCATGGAAAATTTATCGAAGCCTTACCCGAAAGCCTACTTGATGAAATTATGGCAAGGGTTTCAGT
GATTTTTGAGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9418.88 Da        Isoelectric Point: 4.7228

>AT66981 WP_006248517.1 NZ_CP017493:2378029-2378289 [Mannheimia haemolytica]
MPTIALRQVGGSVAMVIPPAFLEALKLSVGSKVDLSLNDNQLVINPARPKVKYSLEELLRQSDFEAARNEESQSWLSEPA
IGKEIL

Download         Length: 261 bp

>AT66981 NZ_CP017493:2378029-2378289 [Mannheimia haemolytica]
ATGCCAACAATCGCATTACGTCAGGTCGGTGGCTCGGTTGCAATGGTGATTCCGCCTGCTTTTTTAGAGGCACTCAAGCT
CTCCGTCGGTAGCAAAGTGGATTTGTCTTTAAACGACAACCAACTCGTGATTAATCCTGCCCGCCCAAAAGTGAAATACA
GCTTAGAGGAATTATTAAGACAATCCGATTTTGAGGCAGCAAGGAATGAAGAAAGCCAATCGTGGTTATCCGAGCCGGCA
ATAGGAAAAGAAATTTTATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A248ZY19

Antitoxin

Source ID Structure
AlphaFold DB A0A248ZX26

References