Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ataRT/DUF1778(antitoxin)
Location 1732015..1732764 Replicon chromosome
Accession NZ_CP017483
Organism Stenotrophomonas sp. LM091

Toxin (Protein)


Gene name ataT Uniprot ID -
Locus tag BIZ42_RS07595 Protein ID WP_083298780.1
Coordinates 1732015..1732404 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID A0A1D8Y932
Locus tag BIZ42_RS07600 Protein ID WP_070426052.1
Coordinates 1732495..1732764 (-) Length 90 a.a.

Genomic Context

BIZ42_RS07590BIZ42_RS07625BIZ42_RS07630BIZ42_RS07595BIZ42_RS07600BIZ42_RS07605BIZ42_RS07610BIZ42_RS07615BIZ42_RS07620
Location: 1728934..1731999 (3066 bp)
Type: Others
Protein ID: WP_070426050.1
Location: 1736010..1736294 (285 bp)
Type: Others
Protein ID: WP_070426055.1
Location: 1736411..1737571 (1161 bp)
Type: Others
Protein ID: WP_070426056.1
Location: 1732015..1732404 (390 bp)
Type: Toxin
Protein ID: WP_083298780.1
Location: 1732495..1732764 (270 bp)
Type: Antitoxin
Protein ID: WP_070426052.1
Location: 1732943..1734046 (1104 bp)
Type: Others
Protein ID: WP_070427476.1
Location: 1734286..1734633 (348 bp)
Type: Others
Protein ID: WP_019183559.1
Location: 1734648..1735388 (741 bp)
Type: Others
Protein ID: WP_070426053.1
Location: 1735385..1735879 (495 bp)
Type: Others
Protein ID: WP_070426054.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
BIZ42_RS075901728934..1731999+3066WP_070426050.1efflux RND transporter permease subunit-
BIZ42_RS075951732015..1732404-390WP_083298780.1GNAT family N-acetyltransferaseToxin
BIZ42_RS076001732495..1732764-270WP_070426052.1DUF1778 domain-containing proteinAntitoxin
BIZ42_RS076051732943..1734046-1104WP_070427476.13-deoxy-7-phosphoheptulonate synthase AroG-
BIZ42_RS076101734286..1734633-348WP_019183559.1hypothetical protein-
BIZ42_RS076151734648..1735388-741WP_070426053.1DNA alkylation repair protein-
BIZ42_RS076201735385..1735879-495WP_070426054.1MarR family transcriptional regulator-
BIZ42_RS076251736010..1736294+285WP_070426055.1hypothetical protein-
BIZ42_RS076301736411..1737571+1161WP_070426056.1serine hydrolase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(15-115)

Antitoxin

Vibrio phage ICP1, Orf50

(8-82)


Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 13872.19 Da        Isoelectric Point: 8.9953

>T66907 WP_083298780.1 NZ_CP017483:c1732404-1732015 [Stenotrophomonas sp. LM091]
MERAHQNQASGASRCFVVCDAQHNVVGYYALAAGGVSHQLVPGRLRRNMPHPIPVIVLCRLAVHADWVGQGVGAGLLKDA
VQRTMQVCGHIGARALLCHAFDDTAKAFYLKHGFIASPMDGRTMMLPVA

Download         Length: 390 bp

>T66907 NZ_CP017483:c1732404-1732015 [Stenotrophomonas sp. LM091]
ATGGAGCGTGCCCACCAGAACCAGGCATCGGGGGCATCGCGGTGTTTTGTTGTGTGTGATGCGCAACACAATGTGGTGGG
CTATTACGCGCTCGCTGCCGGCGGCGTTTCGCACCAGCTGGTTCCCGGTCGCCTTCGCCGGAACATGCCGCACCCCATTC
CGGTCATCGTGCTGTGCAGGTTGGCCGTCCATGCCGACTGGGTCGGCCAGGGCGTCGGCGCGGGACTGCTGAAAGACGCT
GTGCAACGCACGATGCAGGTCTGCGGGCACATCGGCGCGCGCGCCTTGTTGTGTCATGCGTTCGACGACACTGCCAAAGC
GTTCTATCTCAAGCATGGCTTCATCGCGTCGCCGATGGATGGCAGGACGATGATGTTGCCTGTTGCATAG

Antitoxin


Download         Length: 90 a.a.        Molecular weight: 9874.30 Da        Isoelectric Point: 6.2918

>AT66907 WP_070426052.1 NZ_CP017483:c1732764-1732495 [Stenotrophomonas sp. LM091]
VALASKVINFRAPADKQALIDRAVEVTGVSRTEFILDAACEKAREVLADQTQFSLDPQQLRRFNALLDAPLENNAAIRKL
LSTPAPWER

Download         Length: 270 bp

>AT66907 NZ_CP017483:c1732764-1732495 [Stenotrophomonas sp. LM091]
GTGGCCCTCGCCAGCAAAGTCATCAACTTCCGGGCGCCCGCCGACAAGCAGGCGCTGATCGACCGCGCCGTTGAGGTTAC
CGGGGTGAGCCGAACCGAGTTCATTCTGGATGCTGCCTGTGAGAAGGCGCGGGAGGTACTCGCGGACCAGACACAGTTCT
CCCTGGATCCTCAGCAGCTGCGACGCTTTAATGCGTTGCTGGATGCACCGCTGGAAAACAACGCGGCCATCAGGAAACTG
TTGAGCACGCCTGCACCCTGGGAGCGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A1D8Y932

References