66895

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tad-ata/COG5606-COG4679
Location 2316044..2316707 Replicon chromosome
Accession NZ_CP017482
Organism Pectobacterium polaris strain NIBIO1392

Toxin (Protein)


Gene name tad Uniprot ID -
Locus tag BJK05_RS10500 Protein ID WP_010279985.1
Coordinates 2316044..2316388 (+) Length 115 a.a.

Antitoxin (Protein)


Gene name ata Uniprot ID -
Locus tag BJK05_RS10505 Protein ID WP_039538898.1
Coordinates 2316390..2316707 (+) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BJK05_RS10480 2311583..2312356 - 774 WP_095700213.1 alpha/beta hydrolase -
BJK05_RS10485 2312523..2313551 + 1029 WP_095700214.1 helix-turn-helix domain-containing protein -
BJK05_RS10490 2313657..2315114 + 1458 WP_095700215.1 sel1 repeat family protein -
BJK05_RS10495 2315304..2315867 + 564 WP_095700216.1 YcxB family protein -
BJK05_RS10500 2316044..2316388 + 345 WP_010279985.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BJK05_RS10505 2316390..2316707 + 318 WP_039538898.1 helix-turn-helix domain-containing protein Antitoxin
BJK05_RS10510 2316796..2317011 - 216 WP_010279992.1 helix-turn-helix domain-containing protein -
BJK05_RS10515 2317118..2317348 + 231 WP_095700217.1 helix-turn-helix domain-containing protein -
BJK05_RS10520 2317431..2317655 + 225 WP_095700218.1 helix-turn-helix domain-containing protein -
BJK05_RS10525 2317675..2318127 + 453 WP_095700219.1 hypothetical protein -
BJK05_RS10530 2318379..2318975 + 597 WP_095700220.1 hypothetical protein -
BJK05_RS10535 2319120..2321354 + 2235 WP_157910739.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(12-105)

Antitoxin

Cro/C1-type helix-turn-helix domain

(34-86)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 12373.09 Da        Isoelectric Point: 9.7825

>T66895 WP_010279985.1 NZ_CP017482:2316044-2316388 [Pectobacterium polaris]
MKSLYWVGSSKKDLQSLPADVQDVFGYALHVAQTGGKHTQAKPLKGFGGAGVLEVVEDYIGDTYRAVYTVKFGEAVYVLH
AFQKKSSSGIATPKPDMNTIRERLKTAENHAKGA

Download         Length: 345 bp

>T66895 NZ_CP017482:2316044-2316388 [Pectobacterium polaris]
ATGAAATCACTCTACTGGGTTGGCAGTAGCAAAAAGGATCTCCAGTCGCTGCCTGCAGATGTGCAGGATGTGTTCGGTTA
CGCACTTCATGTGGCTCAGACTGGTGGTAAGCACACTCAAGCCAAGCCGCTTAAAGGTTTTGGTGGTGCAGGCGTATTAG
AAGTCGTTGAGGATTATATCGGCGATACTTATCGCGCAGTCTACACCGTCAAATTTGGAGAGGCAGTATACGTTCTACAT
GCTTTTCAGAAAAAATCGTCATCTGGAATTGCAACACCAAAACCCGATATGAACACCATTCGTGAACGCCTTAAAACCGC
AGAGAACCATGCAAAAGGAGCATAA

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11448.48 Da        Isoelectric Point: 10.6133

>AT66895 WP_039538898.1 NZ_CP017482:2316390-2316707 [Pectobacterium polaris]
MSQDIEVSSGNVYADLGNLHAEDMLVKAQLATLISSIIKSRRLTQAEAAKLLGMPQPKLSNLLRGQFRGISETKMLECLT
KLGRDIQIVVGKPRRTPGSVKVVFA

Download         Length: 318 bp

>AT66895 NZ_CP017482:2316390-2316707 [Pectobacterium polaris]
ATGAGCCAGGATATTGAAGTCAGCAGCGGTAATGTGTACGCCGACCTTGGCAACTTGCATGCTGAAGATATGTTGGTCAA
AGCGCAGCTTGCCACCCTGATTAGCTCAATCATCAAAAGCCGCCGTCTCACACAGGCAGAAGCAGCGAAGCTATTGGGCA
TGCCCCAACCAAAGCTATCCAACCTATTGCGTGGTCAGTTCAGGGGAATAAGCGAAACCAAAATGCTGGAATGCCTTACG
AAGCTGGGACGCGATATACAGATCGTTGTAGGGAAGCCGCGCCGCACACCGGGTAGCGTTAAAGTCGTGTTTGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References