Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelB(antitoxin)
Location 721487..722057 Replicon chromosome
Accession NZ_CP017482
Organism Pectobacterium polaris strain NIBIO1392

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag BJK05_RS03245 Protein ID WP_095699161.1
Coordinates 721773..722057 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag BJK05_RS03240 Protein ID WP_095699160.1
Coordinates 721487..721726 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BJK05_RS03210 717177..718577 - 1401 WP_095699155.1 EmmdR/YeeO family multidrug/toxin efflux MATE transporter -
BJK05_RS03215 718983..719519 + 537 WP_095699156.1 rhodanese family protein -
BJK05_RS03220 719591..719920 + 330 WP_095699157.1 DHCW motif cupin fold protein -
BJK05_RS03225 720088..720459 - 372 WP_095699158.1 VOC family protein -
BJK05_RS03230 720879..721079 + 201 WP_125460671.1 hypothetical protein -
BJK05_RS03240 721487..721726 - 240 WP_095699160.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
BJK05_RS03245 721773..722057 - 285 WP_095699161.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BJK05_RS03250 722047..722292 - 246 WP_010286544.1 CopG family ribbon-helix-helix protein -
BJK05_RS03255 722517..724031 - 1515 WP_095699162.1 SEC-C domain-containing protein -
BJK05_RS03260 724082..724951 - 870 WP_095699163.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(3-79)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11057.85 Da        Isoelectric Point: 10.2808

>T66894 WP_095699161.1 NZ_CP017482:c722057-721773 [Pectobacterium polaris]
MEIKWLRKAAANLEAEYRYIAQDDSQAASQFIDEVQRLTELLPQQPAMGRPGRVPGTRELVLTHYPYIIPYRVKGNMLQI
LRVFHTHRRLPAKW

Download         Length: 285 bp

>T66894 NZ_CP017482:c722057-721773 [Pectobacterium polaris]
ATGGAAATTAAATGGCTGCGTAAAGCTGCGGCCAATTTGGAAGCCGAGTACCGCTATATCGCGCAGGACGATTCACAAGC
CGCCAGCCAATTCATAGATGAAGTCCAAAGGTTGACGGAATTACTACCGCAACAGCCAGCAATGGGAAGACCTGGCCGTG
TACCTGGAACGCGTGAACTGGTGTTAACGCACTATCCCTACATCATCCCCTACCGCGTGAAAGGTAATATGCTCCAGATT
CTGCGCGTCTTTCATACACACAGACGTTTACCCGCAAAATGGTGA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9255.71 Da        Isoelectric Point: 6.3649

>AT66894 WP_095699160.1 NZ_CP017482:c721726-721487 [Pectobacterium polaris]
MGNVTFRIDDDLKRRSYAALKKLGITPSEALRLTLEYVAENERLPFKQKLLNDEDVELVEVVRERLRNPKPVRMTLDDL

Download         Length: 240 bp

>AT66894 NZ_CP017482:c721726-721487 [Pectobacterium polaris]
ATGGGTAATGTTACTTTCCGTATCGATGACGATCTTAAAAGGCGCTCTTATGCAGCACTGAAGAAACTGGGTATTACGCC
TTCTGAGGCATTGCGCCTTACGTTGGAATACGTTGCTGAAAATGAAAGACTCCCATTTAAACAAAAGTTACTCAATGATG
AAGACGTAGAATTAGTTGAAGTTGTCCGTGAACGTCTTCGCAACCCCAAGCCAGTACGCATGACGCTGGATGATCTTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References