Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VII Classification (family/domain) HepT-MntA/HepT(toxin)
Location 385167..385966 Replicon chromosome
Accession NZ_CP017482
Organism Pectobacterium polaris strain NIBIO1392

Toxin (Protein)


Gene name hepT Uniprot ID -
Locus tag BJK05_RS01735 Protein ID WP_095698920.1
Coordinates 385167..385586 (-) Length 140 a.a.

Antitoxin (Protein)


Gene name mntA Uniprot ID -
Locus tag BJK05_RS01740 Protein ID WP_095698921.1
Coordinates 385583..385966 (-) Length 128 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BJK05_RS01715 380279..380920 + 642 WP_010281304.1 uridine kinase -
BJK05_RS01720 381028..381609 + 582 WP_039482649.1 dCTP deaminase -
BJK05_RS01725 381673..383508 + 1836 WP_095698918.1 outer membrane assembly protein AsmA -
BJK05_RS01730 383771..385123 + 1353 WP_095698919.1 anaerobic C4-dicarboxylate transporter DcuC -
BJK05_RS01735 385167..385586 - 420 WP_095698920.1 DUF86 domain-containing protein Toxin
BJK05_RS01740 385583..385966 - 384 WP_095698921.1 nucleotidyltransferase domain-containing protein Antitoxin
BJK05_RS01745 386106..387692 - 1587 WP_095698922.1 TerC family protein -
BJK05_RS01750 388443..389522 + 1080 WP_095698923.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase -
BJK05_RS01755 389648..390784 + 1137 WP_095698924.1 polysaccharide export protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease HepT-like

(12-129)

Antitoxin

Polymerase beta, nucleotidyltransferase

(4-93)


Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 16129.50 Da        Isoelectric Point: 7.3229

>T66893 WP_095698920.1 NZ_CP017482:c385586-385167 [Pectobacterium polaris]
MTDILLNKSSTIQRCLRRIREEFDTKEEFRQNFTKQDSVILNIQRACEAAIDIANYLIRIKQLGIPQSSRDSFALLAANQ
IITIDLSDNLQKMVGLRNIAVHDYQALNLDIVIHVISHRLSDFERFIKEVARYSDSQHL

Download         Length: 420 bp

>T66893 NZ_CP017482:c385586-385167 [Pectobacterium polaris]
ATGACAGATATTTTGCTCAACAAAAGCAGCACCATTCAAAGATGCCTACGTCGTATTCGTGAGGAATTCGATACTAAAGA
AGAGTTTCGCCAGAACTTCACCAAGCAAGATTCCGTCATACTTAACATACAACGCGCCTGCGAAGCCGCTATTGATATCG
CTAATTATCTTATCCGTATCAAGCAGCTAGGCATACCACAAAGCAGCCGAGATAGCTTCGCGCTTCTTGCTGCAAACCAG
ATAATTACCATTGATCTGTCTGATAATTTGCAAAAAATGGTGGGATTAAGAAATATTGCCGTACATGACTATCAGGCACT
CAATCTGGATATTGTCATCCACGTCATTTCTCATCGTTTAAGCGACTTTGAACGTTTCATCAAAGAAGTAGCCCGATACA
GCGACAGTCAGCACCTTTAG

Antitoxin


Download         Length: 128 a.a.        Molecular weight: 14350.51 Da        Isoelectric Point: 5.6589

>AT66893 WP_095698921.1 NZ_CP017482:c385966-385583 [Pectobacterium polaris]
MFDKIVSTLKKQIPDIKIIYLFGSQATGNARADSDVDIAVMATRALDPVERWELSHQLAKTVDHDVDLIDLLQASTVLKM
EIVRNGKLLYDAKAAAGEFEMTTLSMYQHLQRERADIIRSFNQDLKA

Download         Length: 384 bp

>AT66893 NZ_CP017482:c385966-385583 [Pectobacterium polaris]
ATGTTCGATAAGATCGTTTCAACATTAAAAAAACAGATACCCGACATCAAGATTATTTACCTCTTCGGTTCCCAGGCGAC
GGGCAATGCCAGAGCAGACAGCGATGTCGATATCGCCGTCATGGCGACGAGAGCACTGGATCCTGTTGAACGCTGGGAGC
TATCCCACCAGTTAGCAAAAACAGTGGACCATGATGTCGATCTTATCGATTTATTGCAGGCCTCAACGGTATTAAAAATG
GAGATCGTTCGTAACGGTAAGCTACTTTATGATGCAAAAGCAGCGGCAGGAGAATTTGAAATGACAACACTTTCAATGTA
CCAGCATCTGCAAAGAGAGCGTGCGGATATCATTCGTAGCTTTAATCAGGATCTAAAAGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References