66876

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) sdenTA/AbiEii(toxin)
Location 952101..953541 Replicon chromosome
Accession NZ_CP017481
Organism Pectobacterium polaris strain NIBIO1006

Toxin (Protein)


Gene name sdenT Uniprot ID -
Locus tag BJJ97_RS04305 Protein ID WP_095993165.1
Coordinates 952101..952988 (-) Length 296 a.a.

Antitoxin (Protein)


Gene name sdenA Uniprot ID -
Locus tag BJJ97_RS04310 Protein ID WP_095993166.1
Coordinates 953017..953541 (-) Length 175 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BJJ97_RS04285 948087..948908 + 822 WP_095701183.1 M55 family metallopeptidase -
BJJ97_RS04290 948965..949912 + 948 WP_095993163.1 isoaspartyl peptidase/L-asparaginase -
BJJ97_RS04295 950126..951034 + 909 WP_039474568.1 LysR family transcriptional regulator -
BJJ97_RS04300 951133..951996 + 864 WP_095993164.1 YicC family protein -
BJJ97_RS04305 952101..952988 - 888 WP_095993165.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
BJJ97_RS04310 953017..953541 - 525 WP_095993166.1 hypothetical protein Antitoxin
BJJ97_RS04315 954061..954378 + 318 WP_095993167.1 helix-turn-helix domain-containing protein -
BJJ97_RS04320 954394..954651 - 258 WP_095993168.1 helix-turn-helix domain-containing protein -
BJJ97_RS04325 954749..955075 + 327 WP_095993169.1 helix-turn-helix domain-containing protein -
BJJ97_RS04330 955287..955463 - 177 Protein_830 type II toxin-antitoxin system HipA family toxin -
BJJ97_RS04335 955568..955795 + 228 WP_095993170.1 hypothetical protein -
BJJ97_RS04340 955887..956444 + 558 WP_095993171.1 hypothetical protein -
BJJ97_RS04345 956487..957032 - 546 WP_095993172.1 hypothetical protein -
BJJ97_RS04350 957159..957545 + 387 WP_193438349.1 hypothetical protein -
BJJ97_RS04355 957577..957939 + 363 WP_095995319.1 DUF596 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(39-265)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 296 a.a.        Molecular weight: 33974.93 Da        Isoelectric Point: 5.7136

>T66876 WP_095993165.1 NZ_CP017481:c952988-952101 [Pectobacterium polaris]
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFKPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKEANRPDLPRQKMHIDVCAIPSFDLEKRPLINHYDIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIIWIKQRGIDLSKTLVEKKLTARQKQTEDFRQALSIQLAKLMSEDE
VRDDFNMEMSRFIPKPIKERTLDNPEYWAYVQGEVHAIASELLNDGAPKNPFDMG

Download         Length: 888 bp

>T66876 NZ_CP017481:c952988-952101 [Pectobacterium polaris]
ATGCTGAAGCAACAAATTCGCCAAATTGTCCAGTCAAACCCTGACTATGCCGCAGTGACACCCGTCATAGAAAAAGAGAT
CTTGCATCATGACATTATCGATGTGCTGATCAAACAGGGCGTCATGCAGCGGTTAACGTTCATTGGCGGCACCTCATTAC
GAATGTGTTACAACAGCAGCAGGCTATCAGAAGATCTTGATTTCAATGGTGGTCATGATTTCAAGCCCTCAGCGTTTGAG
GGGCTGGAGTCCGAAATCCAAACCTATATTCAGAACAAGTATGAAACCGAGGTTTGGGTAAACAAACCTTCTGGCGAGCA
GCAAGGGGATACCGTTTCTTGGAAAATTAGTATCGTAAAAGAAGCTAATCGTCCTGATTTGCCACGGCAAAAAATGCATA
TTGACGTCTGTGCTATTCCGTCATTTGATCTTGAAAAGCGCCCGCTAATCAATCATTACGACATTGTTGTACCGACTGAA
GGGATCTTGGTCCCGGTACAGTCGTTACAAGAAACATTGGCTGATAAGCTGATCGCGTTAGCGTATCGGGCAAGACGTAT
TAAACCTCGTGATATCTGGGATATTATTTGGATTAAGCAGCGCGGTATTGATTTATCCAAGACACTGGTTGAAAAGAAGC
TCACCGCCAGACAGAAGCAAACAGAAGACTTTCGACAGGCGCTGTCTATTCAGTTAGCCAAGCTGATGTCGGAAGATGAA
GTCCGTGACGACTTCAATATGGAAATGAGCCGCTTTATCCCTAAGCCAATTAAAGAGAGAACTCTCGATAATCCTGAATA
TTGGGCTTATGTTCAGGGCGAGGTGCATGCCATCGCGTCTGAGTTACTGAATGACGGAGCACCAAAAAATCCATTTGATA
TGGGTTAG

Antitoxin


Download         Length: 175 a.a.        Molecular weight: 19339.48 Da        Isoelectric Point: 9.0504

>AT66876 WP_095993166.1 NZ_CP017481:c953541-953017 [Pectobacterium polaris]
MAKSDELLNALAKAVNAGGGIHSVTELAFMQGVPCDSAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLSYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIEFTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES

Download         Length: 525 bp

>AT66876 NZ_CP017481:c953541-953017 [Pectobacterium polaris]
ATGGCTAAATCTGATGAGCTATTAAACGCGTTGGCTAAAGCAGTGAACGCTGGTGGTGGCATTCACAGTGTAACAGAGCT
GGCTTTTATGCAGGGTGTGCCTTGTGACTCAGCCTTTAGAAAATTCCTGGCAGATTGCGTAAAGAAGGGGTTGCTAAGAC
GAGTGGTGAAAGGCTTCTATGAAAGTGTTATTACACCACCTGAACCTGAGACTGCCATTTATAAAATCATCAAAAAGTTG
CGCAGCGGCGTATTGAGCTACATCAGCTTAGAAAGTCAGCTCAGTCATACCGGTGATATTTCACAAGTTGTGATGGGTAG
AGTCACTGTGGTGACTAAAGGTCGAAGTGGTTGTTTTGATACGCCTTATGGCGTGATCGAGTTTACCCATACTAAAAAGC
CAGTCGAGCAAATTGCACCTAATTTGTACTATGACCCCGACATCAAAATGTATCGCGCATACAAGGAACAAGCGATTGCA
GATCTAAAACACTGCCAGCGCAATCTACATATGTTGGAGAGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References