Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2883790..2883941 | Replicon | chromosome |
| Accession | NZ_CP017475 | ||
| Organism | Enterobacter cloacae strain M12X01451 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2883803..2883906 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2883790..2883941 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GRI03_RS14360 | 2880066..2881508 | + | 1443 | WP_095907937.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GRI03_RS14365 | 2881614..2881853 | + | 240 | WP_013096113.1 | YebV family protein | - |
| GRI03_RS14370 | 2881887..2882531 | - | 645 | WP_095907938.1 | protein-serine/threonine phosphatase | - |
| GRI03_RS14375 | 2882698..2883639 | + | 942 | WP_047352448.1 | VirK/YbjX family protein | - |
| - | 2883790..2883941 | + | 152 | - | - | Antitoxin |
| - | 2883803..2883906 | - | 104 | - | - | Toxin |
| GRI03_RS14380 | 2884047..2884385 | - | 339 | WP_013096105.1 | YebY family protein | - |
| GRI03_RS14385 | 2884402..2885271 | - | 870 | WP_095907939.1 | copper homeostasis membrane protein CopD | - |
| GRI03_RS14390 | 2885273..2885644 | - | 372 | WP_095907940.1 | CopC domain-containing protein YobA | - |
| GRI03_RS14395 | 2885782..2886012 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| GRI03_RS14400 | 2886122..2886772 | + | 651 | WP_038419917.1 | carbon-nitrogen hydrolase family protein | - |
| GRI03_RS14405 | 2886796..2887458 | + | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66856 NZ_CP017475:c2883906-2883803 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT66856 NZ_CP017475:2883790-2883941 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
