Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 464073..464155 Replicon chromosome
Accession NZ_CP017453
Organism Dickeya solani D s0432-1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 464073..464153 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 464073..464155 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BJD21_RS01935 460144..461886 + 1743 WP_022633461.1 ABC transporter permease subunit -
BJD21_RS01940 462003..462251 - 249 WP_022633460.1 GlsB/YeaQ/YmgE family stress response membrane protein -
BJD21_RS01945 462603..463046 - 444 WP_022633459.1 hypothetical protein -
BJD21_RS01950 463565..463903 + 339 WP_022633458.1 YebY family protein -
- 464073..464153 + 81 - - Toxin
- 464073..464155 - 83 - - Antitoxin
BJD21_RS01955 464374..464604 - 231 WP_198560147.1 aminopeptidase -
BJD21_RS01960 464971..466095 + 1125 WP_022633457.1 FIST C-terminal domain-containing protein -
BJD21_RS01965 466088..467203 + 1116 WP_022633456.1 sensor histidine kinase -
BJD21_RS01970 467194..468291 + 1098 WP_022633455.1 HDOD domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 462603..470962 8359


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T66788 NZ_CP017453:464073-464153 [Dickeya solani D s0432-1]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT66788 NZ_CP017453:c464155-464073 [Dickeya solani D s0432-1]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References