Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 464073..464155 | Replicon | chromosome |
| Accession | NZ_CP017453 | ||
| Organism | Dickeya solani D s0432-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 464073..464153 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 464073..464155 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJD21_RS01935 | 460144..461886 | + | 1743 | WP_022633461.1 | ABC transporter permease subunit | - |
| BJD21_RS01940 | 462003..462251 | - | 249 | WP_022633460.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| BJD21_RS01945 | 462603..463046 | - | 444 | WP_022633459.1 | hypothetical protein | - |
| BJD21_RS01950 | 463565..463903 | + | 339 | WP_022633458.1 | YebY family protein | - |
| - | 464073..464153 | + | 81 | - | - | Toxin |
| - | 464073..464155 | - | 83 | - | - | Antitoxin |
| BJD21_RS01955 | 464374..464604 | - | 231 | WP_198560147.1 | aminopeptidase | - |
| BJD21_RS01960 | 464971..466095 | + | 1125 | WP_022633457.1 | FIST C-terminal domain-containing protein | - |
| BJD21_RS01965 | 466088..467203 | + | 1116 | WP_022633456.1 | sensor histidine kinase | - |
| BJD21_RS01970 | 467194..468291 | + | 1098 | WP_022633455.1 | HDOD domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 462603..470962 | 8359 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T66788 NZ_CP017453:464073-464153 [Dickeya solani D s0432-1]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT66788 NZ_CP017453:c464155-464073 [Dickeya solani D s0432-1]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
