Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 118856..119382 | Replicon | plasmid unnamed1 |
| Accession | NZ_CP017451 | ||
| Organism | Klebsiella sp. LTGPAF-6F | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | BJF97_RS29460 | Protein ID | WP_000323025.1 |
| Coordinates | 118856..119143 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | J5W3H0 |
| Locus tag | BJF97_RS29465 | Protein ID | WP_004196370.1 |
| Coordinates | 119143..119382 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJF97_RS29425 | 113897..114130 | - | 234 | WP_042935952.1 | hypothetical protein | - |
| BJF97_RS29430 | 114209..114556 | - | 348 | WP_042935949.1 | hypothetical protein | - |
| BJF97_RS29435 | 114712..115779 | - | 1068 | WP_045289278.1 | hypothetical protein | - |
| BJF97_RS29440 | 115848..116144 | - | 297 | WP_094313394.1 | hydrogenase expression/formation protein HypD | - |
| BJF97_RS29445 | 116471..116848 | + | 378 | WP_045289277.1 | hypothetical protein | - |
| BJF97_RS34860 | 117046..118020 | - | 975 | WP_004196336.1 | hypothetical protein | - |
| BJF97_RS29455 | 118626..118784 | - | 159 | WP_004181898.1 | type I toxin-antitoxin system Hok family toxin | - |
| BJF97_RS29460 | 118856..119143 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| BJF97_RS29465 | 119143..119382 | - | 240 | WP_004196370.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| BJF97_RS33395 | 119633..119998 | + | 366 | WP_009651956.1 | hypothetical protein | - |
| BJF97_RS29475 | 120042..120779 | + | 738 | WP_008460272.1 | HupE/UreJ family protein | - |
| BJF97_RS29480 | 120793..121482 | + | 690 | WP_004196322.1 | hypothetical protein | - |
| BJF97_RS29485 | 121513..122889 | - | 1377 | WP_004196363.1 | chromate efflux transporter | - |
| BJF97_RS29490 | 122846..123823 | - | 978 | WP_004196334.1 | chromate resistance protein | - |
| BJF97_RS34490 | 123853..124045 | + | 193 | Protein_123 | MFS transporter | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | aph(3'')-Ib / aph(6)-Id / formA | - | 1..526446 | 526446 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T66781 WP_000323025.1 NZ_CP017451:c119143-118856 [Klebsiella sp. LTGPAF-6F]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T66781 NZ_CP017451:c119143-118856 [Klebsiella sp. LTGPAF-6F]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9018.43 Da Isoelectric Point: 4.3894
>AT66781 WP_004196370.1 NZ_CP017451:c119382-119143 [Klebsiella sp. LTGPAF-6F]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLCNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLCNPKPVRVTLDEL
Download Length: 240 bp
>AT66781 NZ_CP017451:c119382-119143 [Klebsiella sp. LTGPAF-6F]
ATGGGTAGCATTAACCTACGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGCGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGACTTTGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTACGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGCGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGACTTTGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|