Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3855540..3855708 | Replicon | chromosome |
| Accession | NZ_CP017450 | ||
| Organism | Klebsiella sp. LTGPAF-6F | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3855547..3855650 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3855540..3855708 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJF97_RS17965 | 3850814..3851332 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| BJF97_RS17970 | 3851351..3852115 | + | 765 | WP_032694916.1 | molecular chaperone | - |
| BJF97_RS17975 | 3852118..3854448 | + | 2331 | WP_032694917.1 | fimbrial biogenesis outer membrane usher protein | - |
| BJF97_RS17980 | 3854463..3855422 | + | 960 | WP_025106131.1 | spore coat U domain-containing protein | - |
| - | 3855540..3855708 | + | 169 | - | - | Antitoxin |
| - | 3855547..3855650 | - | 104 | - | - | Toxin |
| BJF97_RS17985 | 3855807..3856145 | - | 339 | WP_004103344.1 | YebY family protein | - |
| BJF97_RS17990 | 3856162..3857031 | - | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| BJF97_RS17995 | 3857036..3857410 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| BJF97_RS18000 | 3857546..3857776 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| BJF97_RS18005 | 3857855..3858514 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| BJF97_RS18010 | 3858521..3860581 | - | 2061 | WP_014229840.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66768 NZ_CP017450:c3855650-3855547 [Klebsiella sp. LTGPAF-6F]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT66768 NZ_CP017450:3855540-3855708 [Klebsiella sp. LTGPAF-6F]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
