Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172955..2173226 | Replicon | chromosome |
| Accession | NZ_CP017444 | ||
| Organism | Escherichia coli O157:H7 strain 8368 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2173085..2173188 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172955..2173226 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4C39_RS11040 | 2169510..2170172 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| A4C39_RS11045 | 2170196..2170852 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| A4C39_RS11050 | 2170954..2171184 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A4C39_RS11055 | 2171323..2171697 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| A4C39_RS11060 | 2171701..2172573 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| A4C39_RS11065 | 2172586..2172927 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2172955..2173226 | - | 272 | - | - | Antitoxin |
| - | 2173085..2173188 | + | 104 | - | - | Toxin |
| A4C39_RS11075 | 2173323..2173979 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| A4C39_RS11080 | 2173980..2174171 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A4C39_RS11085 | 2174276..2174512 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A4C39_RS11090 | 2174630..2176069 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66705 NZ_CP017444:2173085-2173188 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT66705 NZ_CP017444:c2173226-2172955 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
