Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3541503..3541647 | Replicon | chromosome |
| Accession | NZ_CP017289 | ||
| Organism | Klebsiella variicola strain GJ3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3541509..3541611 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3541503..3541647 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBD65_RS19580 | 3537025..3538458 | + | 1434 | WP_077139314.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BBD65_RS19585 | 3538574..3538813 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BBD65_RS19590 | 3538911..3539102 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BBD65_RS19595 | 3539099..3539752 | - | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| BBD65_RS19600 | 3539888..3540877 | + | 990 | WP_032691211.1 | VirK/YbjX family protein | - |
| BBD65_RS30305 | 3540981..3541124 | + | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| - | 3541503..3541647 | + | 145 | - | - | Antitoxin |
| - | 3541509..3541611 | - | 103 | - | - | Toxin |
| BBD65_RS19610 | 3541769..3542107 | - | 339 | WP_008804271.1 | YebY family protein | - |
| BBD65_RS19615 | 3542124..3542993 | - | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| BBD65_RS19620 | 3542997..3543371 | - | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| BBD65_RS19625 | 3543485..3543715 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| BBD65_RS19630 | 3543794..3544453 | + | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| BBD65_RS19635 | 3544457..3546517 | - | 2061 | WP_012541258.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T66406 NZ_CP017289:c3541611-3541509 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT66406 NZ_CP017289:3541503-3541647 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
