Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3294682..3294953 Replicon chromosome
Accession NZ_CP017251
Organism Escherichia coli strain NADC 5570/86-24/6564 isolate wild

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3294720..3294823 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3294682..3294953 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BHW77_RS17275 3291839..3293278 + 1440 WP_001302304.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
BHW77_RS17280 3293396..3293632 + 237 WP_001295499.1 DUF1480 family protein -
BHW77_RS17285 3293737..3293928 + 192 WP_001296140.1 YebW family protein -
BHW77_RS17290 3293929..3294585 - 657 WP_000812736.1 protein-serine/threonine phosphatase -
- 3294682..3294953 + 272 - - Antitoxin
- 3294720..3294823 - 104 - - Toxin
BHW77_RS17300 3294981..3295322 - 342 WP_000976483.1 YebY family protein -
BHW77_RS17305 3295335..3296207 - 873 WP_000879314.1 copper homeostasis membrane protein CopD -
BHW77_RS17310 3296211..3296585 - 375 WP_000168751.1 CopC domain-containing protein YobA -
BHW77_RS17315 3296724..3296954 + 231 WP_000916763.1 DNA polymerase III subunit theta -
BHW77_RS17320 3297056..3297712 + 657 WP_000011656.1 carbon-nitrogen hydrolase family protein -
BHW77_RS17325 3297736..3298398 + 663 WP_000944243.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T66334 NZ_CP017251:c3294823-3294720 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT66334 NZ_CP017251:3294682-3294953 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References