Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3294671..3294942 | Replicon | chromosome |
| Accession | NZ_CP017249 | ||
| Organism | Escherichia coli strain NADC 5570/86-24/6565 isolate mutant | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3294709..3294812 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3294671..3294942 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BHW76_RS17260 | 3291828..3293267 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BHW76_RS17265 | 3293385..3293621 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BHW76_RS17270 | 3293726..3293917 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BHW76_RS17275 | 3293918..3294574 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3294671..3294942 | + | 272 | - | - | Antitoxin |
| - | 3294709..3294812 | - | 104 | - | - | Toxin |
| BHW76_RS17285 | 3294970..3295311 | - | 342 | WP_000976483.1 | YebY family protein | - |
| BHW76_RS17290 | 3295324..3296196 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| BHW76_RS17295 | 3296200..3296574 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| BHW76_RS17300 | 3296713..3296943 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BHW76_RS17305 | 3297045..3297701 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| BHW76_RS17310 | 3297725..3298387 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66302 NZ_CP017249:c3294812-3294709 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT66302 NZ_CP017249:3294671-3294942 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
