Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1572725..1572875 | Replicon | chromosome |
| Accession | NZ_CP017236 | ||
| Organism | Yersinia ruckeri strain QMA0440 isolate 14/0165-5k | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1572774..1572867 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1572725..1572875 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMA0440_RS07190 | 1568281..1569231 | + | 951 | WP_038243342.1 | prolyl aminopeptidase | - |
| QMA0440_RS07195 | 1569354..1569584 | - | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| QMA0440_RS07200 | 1569987..1570502 | + | 516 | WP_004721727.1 | non-heme ferritin | - |
| QMA0440_RS07205 | 1570907..1571293 | + | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| QMA0440_RS07210 | 1571295..1572179 | + | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| QMA0440_RS07215 | 1572274..1572615 | + | 342 | WP_004721721.1 | YebY family protein | - |
| - | 1572725..1572875 | - | 151 | - | - | Antitoxin |
| - | 1572774..1572867 | + | 94 | - | - | Toxin |
| QMA0440_RS07220 | 1572943..1574052 | - | 1110 | WP_038243348.1 | tyrosine-type recombinase/integrase | - |
| QMA0440_RS07225 | 1574027..1574296 | - | 270 | WP_038243350.1 | excisionase | - |
| QMA0440_RS07230 | 1574653..1575165 | - | 513 | WP_038243351.1 | hypothetical protein | - |
| QMA0440_RS18145 | 1575165..1575338 | - | 174 | WP_170854680.1 | hypothetical protein | - |
| QMA0440_RS07235 | 1575423..1575677 | - | 255 | WP_038243353.1 | hypothetical protein | - |
| QMA0440_RS07240 | 1575674..1576210 | - | 537 | WP_038243354.1 | hypothetical protein | - |
| QMA0440_RS07245 | 1576210..1576689 | - | 480 | WP_051847014.1 | hypothetical protein | - |
| QMA0440_RS07250 | 1576686..1576922 | - | 237 | WP_038243357.1 | hypothetical protein | - |
| QMA0440_RS07255 | 1576919..1577254 | - | 336 | WP_038243358.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1566752..1634364 | 67612 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T66263 NZ_CP017236:1572774-1572867 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 151 bp
>AT66263 NZ_CP017236:c1572875-1572725 [Yersinia ruckeri]
AATAGATTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAA
GTTGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AATAGATTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAA
GTTGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
