Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2816137..2816282 | Replicon | chromosome |
| Accession | NZ_CP017184 | ||
| Organism | Enterobacter roggenkampii strain DSM 16690 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2816144..2816247 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2816137..2816282 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFV67_RS13215 | 2811352..2812800 | + | 1449 | WP_201258618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BFV67_RS13220 | 2812907..2813146 | + | 240 | WP_008500472.1 | YebV family protein | - |
| BFV67_RS13225 | 2813181..2813825 | - | 645 | WP_023325510.1 | protein-serine/threonine phosphatase | - |
| BFV67_RS13230 | 2813992..2814933 | + | 942 | WP_069598482.1 | VirK/YbjX family protein | - |
| BFV67_RS13235 | 2815240..2815731 | - | 492 | WP_069598956.1 | hypothetical protein | - |
| - | 2816137..2816282 | + | 146 | - | - | Antitoxin |
| - | 2816144..2816247 | - | 104 | - | - | Toxin |
| BFV67_RS13240 | 2816386..2816724 | - | 339 | WP_008500468.1 | YebY family protein | - |
| BFV67_RS13245 | 2816741..2817610 | - | 870 | WP_069598483.1 | copper homeostasis membrane protein CopD | - |
| BFV67_RS13250 | 2817612..2817983 | - | 372 | WP_069598484.1 | CopC domain-containing protein YobA | - |
| BFV67_RS13255 | 2818121..2818351 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| BFV67_RS13260 | 2818462..2819112 | + | 651 | WP_069598485.1 | carbon-nitrogen hydrolase family protein | - |
| BFV67_RS13265 | 2819137..2819799 | + | 663 | WP_069598486.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66188 NZ_CP017184:c2816247-2816144 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT66188 NZ_CP017184:2816137-2816282 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
