Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2746293..2746494 | Replicon | chromosome |
| Accession | NZ_CP017183 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain LMG27195 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2746298..2746401 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2746293..2746494 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFV63_RS13180 | 2742559..2744001 | + | 1443 | WP_072203115.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BFV63_RS13185 | 2744108..2744347 | + | 240 | WP_003859885.1 | YebV family protein | - |
| BFV63_RS13190 | 2744382..2745026 | - | 645 | WP_045337547.1 | protein-serine/threonine phosphatase | - |
| BFV63_RS13195 | 2745194..2746174 | + | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| BFV63_RS13200 | 2746220..2746417 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2746293..2746494 | + | 202 | - | - | Antitoxin |
| - | 2746298..2746401 | - | 104 | - | - | Toxin |
| BFV63_RS13205 | 2746544..2746882 | - | 339 | WP_048240591.1 | YebY family protein | - |
| BFV63_RS13210 | 2746899..2747768 | - | 870 | WP_048240589.1 | copper homeostasis membrane protein CopD | - |
| BFV63_RS13215 | 2747770..2748141 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| BFV63_RS13220 | 2748279..2748509 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| BFV63_RS13225 | 2748621..2749271 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| BFV63_RS13230 | 2749296..2749958 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66172 NZ_CP017183:c2746401-2746298 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT66172 NZ_CP017183:2746293-2746494 [Enterobacter hormaechei subsp. xiangfangensis]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
