Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2715481..2715690 | Replicon | chromosome |
| Accession | NZ_CP017179 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2715494..2715597 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2715481..2715690 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFV68_RS12730 | 2711756..2713197 | + | 1442 | Protein_2499 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BFV68_RS12735 | 2713304..2713543 | + | 240 | WP_003859885.1 | YebV family protein | - |
| BFV68_RS12740 | 2713578..2714222 | - | 645 | WP_069595855.1 | protein-serine/threonine phosphatase | - |
| BFV68_RS12745 | 2714390..2715370 | + | 981 | WP_033486806.1 | VirK/YbjX family protein | - |
| BFV68_RS12750 | 2715416..2715613 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2715481..2715690 | + | 210 | - | - | Antitoxin |
| - | 2715494..2715597 | - | 104 | - | - | Toxin |
| BFV68_RS12755 | 2715739..2716077 | - | 339 | WP_033486805.1 | YebY family protein | - |
| BFV68_RS12760 | 2716094..2716963 | - | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| BFV68_RS12765 | 2716965..2717336 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| BFV68_RS12770 | 2717474..2717704 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| BFV68_RS12775 | 2717816..2718466 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| BFV68_RS12780 | 2718490..2719152 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66120 NZ_CP017179:c2715597-2715494 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT66120 NZ_CP017179:2715481-2715690 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
