Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | mazEF/MazF(toxin) |
Location | 2371541..2372050 | Replicon | chromosome |
Accession | NZ_CP017156 | ||
Organism | Macrococcus sp. IME1552 |
Toxin (Protein)
Gene name | mazF | Uniprot ID | - |
Locus tag | BHM04_RS12355 | Protein ID | WP_096078043.1 |
Coordinates | 2371688..2372050 (+) | Length | 121 a.a. |
Antitoxin (Protein)
Gene name | mazE | Uniprot ID | - |
Locus tag | BHM04_RS12685 | Protein ID | WP_165958642.1 |
Coordinates | 2371541..2371687 (+) | Length | 49 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BHM04_RS12330 | 2367502..2367981 | + | 480 | WP_157742257.1 | PH domain-containing protein | - |
BHM04_RS12335 | 2367968..2369473 | + | 1506 | WP_096078039.1 | PH domain-containing protein | - |
BHM04_RS12340 | 2369466..2369945 | + | 480 | WP_096078040.1 | PH domain-containing protein | - |
BHM04_RS12345 | 2369938..2370276 | + | 339 | WP_096078041.1 | holo-ACP synthase | - |
BHM04_RS12350 | 2370333..2371478 | + | 1146 | WP_096078042.1 | alanine racemase | - |
BHM04_RS12685 | 2371541..2371687 | + | 147 | WP_165958642.1 | hypothetical protein | Antitoxin |
BHM04_RS12355 | 2371688..2372050 | + | 363 | WP_096078043.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin |
BHM04_RS12360 | 2372100..2373107 | + | 1008 | WP_096078044.1 | PP2C family protein-serine/threonine phosphatase | - |
BHM04_RS12365 | 2373197..2373523 | + | 327 | WP_096078045.1 | anti-sigma factor antagonist | - |
BHM04_RS12370 | 2373525..2373965 | + | 441 | WP_096078046.1 | anti-sigma B factor RsbW | - |
BHM04_RS12375 | 2373976..2374743 | + | 768 | WP_096078047.1 | RNA polymerase sigma factor SigB | - |
BHM04_RS12380 | 2374824..2376974 | + | 2151 | WP_096078048.1 | RNA-binding transcriptional accessory protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 121 a.a. Molecular weight: 13231.30 Da Isoelectric Point: 7.3168
>T66092 WP_096078043.1 NZ_CP017156:2371688-2372050 [Macrococcus sp. IME1552]
MKRGDVYLADLSPVKGSEQGGKRPVVIIQNDIGNKYSPTVIVAAITAKINKSKIPTHVEIGKTNHHLDKDSVILLEQIRT
IDKNRLIEKLTYLPKEKMEEVDAALAISLNLSIDDSETLG
MKRGDVYLADLSPVKGSEQGGKRPVVIIQNDIGNKYSPTVIVAAITAKINKSKIPTHVEIGKTNHHLDKDSVILLEQIRT
IDKNRLIEKLTYLPKEKMEEVDAALAISLNLSIDDSETLG
Download Length: 363 bp
>T66092 NZ_CP017156:2371688-2372050 [Macrococcus sp. IME1552]
ATGAAACGAGGCGATGTTTATTTAGCTGATTTGTCACCTGTTAAAGGTTCAGAGCAAGGCGGTAAACGACCTGTAGTAAT
CATTCAAAATGACATAGGAAATAAATATAGTCCGACGGTTATAGTTGCAGCTATCACTGCTAAAATCAATAAATCAAAAA
TCCCAACGCACGTAGAGATTGGTAAGACCAATCATCATCTAGATAAAGATTCTGTGATTTTATTAGAACAAATAAGAACA
ATTGATAAAAATCGACTTATTGAAAAATTGACTTACCTGCCAAAAGAGAAGATGGAGGAAGTTGATGCAGCACTAGCAAT
TAGTCTTAATTTATCTATTGATGACTCGGAGACTTTAGGCTAA
ATGAAACGAGGCGATGTTTATTTAGCTGATTTGTCACCTGTTAAAGGTTCAGAGCAAGGCGGTAAACGACCTGTAGTAAT
CATTCAAAATGACATAGGAAATAAATATAGTCCGACGGTTATAGTTGCAGCTATCACTGCTAAAATCAATAAATCAAAAA
TCCCAACGCACGTAGAGATTGGTAAGACCAATCATCATCTAGATAAAGATTCTGTGATTTTATTAGAACAAATAAGAACA
ATTGATAAAAATCGACTTATTGAAAAATTGACTTACCTGCCAAAAGAGAAGATGGAGGAAGTTGATGCAGCACTAGCAAT
TAGTCTTAATTTATCTATTGATGACTCGGAGACTTTAGGCTAA
Antitoxin
Download Length: 49 a.a. Molecular weight: 5544.19 Da Isoelectric Point: 3.7510
>AT66092 WP_165958642.1 NZ_CP017156:2371541-2371687 [Macrococcus sp. IME1552]
MSKLLEQQLIEGYQSMAEINLLIASEHYLLECEVYDNVDHMSVQNDGE
MSKLLEQQLIEGYQSMAEINLLIASEHYLLECEVYDNVDHMSVQNDGE
Download Length: 147 bp
>AT66092 NZ_CP017156:2371541-2371687 [Macrococcus sp. IME1552]
ATGAGTAAACTACTAGAACAACAATTGATTGAAGGTTATCAATCAATGGCTGAAATTAATCTGTTAATTGCTTCAGAACA
TTATCTCCTTGAATGTGAAGTGTATGATAATGTGGATCATATGTCAGTACAAAATGATGGTGAATAA
ATGAGTAAACTACTAGAACAACAATTGATTGAAGGTTATCAATCAATGGCTGAAATTAATCTGTTAATTGCTTCAGAACA
TTATCTCCTTGAATGTGAAGTGTATGATAATGTGGATCATATGTCAGTACAAAATGATGGTGAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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