Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1132622..1132766 | Replicon | chromosome |
| Accession | NZ_CP017087 | ||
| Organism | Enterobacter sp. HK169 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1132628..1132731 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1132622..1132766 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EnteroDNA1_RS05445 | 1127779..1129227 | + | 1449 | WP_197506919.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EnteroDNA1_RS05450 | 1129334..1129573 | + | 240 | WP_008500472.1 | YebV family protein | - |
| EnteroDNA1_RS05455 | 1129608..1130252 | - | 645 | WP_069302999.1 | protein-serine/threonine phosphatase | - |
| EnteroDNA1_RS05460 | 1130419..1131360 | + | 942 | WP_069303000.1 | VirK/YbjX family protein | - |
| EnteroDNA1_RS05465 | 1131534..1132430 | + | 897 | WP_064672719.1 | benzoate transporter | - |
| - | 1132622..1132766 | + | 145 | - | - | Antitoxin |
| - | 1132628..1132731 | - | 104 | - | - | Toxin |
| EnteroDNA1_RS05470 | 1132870..1133208 | - | 339 | WP_069303001.1 | YebY family protein | - |
| EnteroDNA1_RS05475 | 1133225..1134094 | - | 870 | WP_033145841.1 | copper homeostasis membrane protein CopD | - |
| EnteroDNA1_RS05480 | 1134096..1134467 | - | 372 | WP_033145842.1 | CopC domain-containing protein YobA | - |
| EnteroDNA1_RS05485 | 1134604..1134834 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| EnteroDNA1_RS05490 | 1134945..1135595 | + | 651 | WP_033145843.1 | carbon-nitrogen hydrolase family protein | - |
| EnteroDNA1_RS05495 | 1135620..1136282 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T65892 NZ_CP017087:c1132731-1132628 [Enterobacter sp. HK169]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT65892 NZ_CP017087:1132622-1132766 [Enterobacter sp. HK169]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
