Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 5273081..5273622 | Replicon | chromosome |
Accession | NZ_CP017007 | ||
Organism | Pseudomonas syringae pv. actinidiae strain ICMP 20586 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A0K8LVV5 |
Locus tag | PsaNZ45_RS25630 | Protein ID | WP_017683357.1 |
Coordinates | 5273347..5273622 (+) | Length | 92 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A0K8LU58 |
Locus tag | PsaNZ45_RS25625 | Protein ID | WP_003382249.1 |
Coordinates | 5273081..5273347 (+) | Length | 89 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PsaNZ45_RS25610 | 5268364..5268627 | + | 264 | WP_017683360.1 | hypothetical protein | - |
PsaNZ45_RS25615 | 5268755..5270635 | - | 1881 | WP_003382247.1 | methyl-accepting chemotaxis protein | - |
PsaNZ45_RS25620 | 5270994..5272916 | + | 1923 | WP_017683359.1 | methyl-accepting chemotaxis protein | - |
PsaNZ45_RS25625 | 5273081..5273347 | + | 267 | WP_003382249.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
PsaNZ45_RS25630 | 5273347..5273622 | + | 276 | WP_017683357.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
PsaNZ45_RS25640 | 5274194..5275462 | + | 1269 | WP_007244158.1 | OprD family porin | - |
PsaNZ45_RS25645 | 5275641..5276465 | + | 825 | WP_003380380.1 | NAD(P)-dependent oxidoreductase | - |
PsaNZ45_RS25650 | 5276525..5277409 | + | 885 | WP_003380378.1 | SMP-30/gluconolactonase/LRE family protein | - |
PsaNZ45_RS25655 | 5277466..5278505 | + | 1040 | Protein_4674 | TRAP transporter substrate-binding protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 5249257..5276465 | 27208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10770.41 Da Isoelectric Point: 7.0123
>T65793 WP_017683357.1 NZ_CP017007:5273347-5273622 [Pseudomonas syringae pv. actinidiae]
MELMWTSKTLSDVTRLYDFLAVANQPAAAQTAQKLTAAPIMLLSNPRIGERLEEFEPRDVRRIQIGRYEMRYEIVDSTIY
LLRLWHTREDR
MELMWTSKTLSDVTRLYDFLAVANQPAAAQTAQKLTAAPIMLLSNPRIGERLEEFEPRDVRRIQIGRYEMRYEIVDSTIY
LLRLWHTREDR
Download Length: 276 bp
>T65793 NZ_CP017007:5273347-5273622 [Pseudomonas syringae pv. actinidiae]
ATGGAGCTGATGTGGACAAGCAAAACGCTATCTGACGTCACCCGCCTGTATGATTTTTTAGCGGTAGCAAACCAGCCCGC
TGCCGCCCAGACCGCACAGAAGCTTACAGCGGCGCCGATCATGCTCCTTTCCAACCCGCGGATTGGTGAGCGTCTGGAGG
AGTTTGAGCCCCGGGATGTGCGCAGAATTCAGATAGGCCGCTATGAAATGCGCTACGAAATTGTGGACTCAACAATTTAT
CTGTTGCGGCTGTGGCATACACGCGAGGATCGGTAA
ATGGAGCTGATGTGGACAAGCAAAACGCTATCTGACGTCACCCGCCTGTATGATTTTTTAGCGGTAGCAAACCAGCCCGC
TGCCGCCCAGACCGCACAGAAGCTTACAGCGGCGCCGATCATGCTCCTTTCCAACCCGCGGATTGGTGAGCGTCTGGAGG
AGTTTGAGCCCCGGGATGTGCGCAGAATTCAGATAGGCCGCTATGAAATGCGCTACGAAATTGTGGACTCAACAATTTAT
CTGTTGCGGCTGTGGCATACACGCGAGGATCGGTAA
Antitoxin
Download Length: 89 a.a. Molecular weight: 9934.24 Da Isoelectric Point: 5.7066
>AT65793 WP_003382249.1 NZ_CP017007:5273081-5273347 [Pseudomonas syringae pv. actinidiae]
MTTKTRSVTAHIPEQLAEKVDLMAERLERSKNWIVKQALSAWIDQEEERSRLTREALADVDAGRVIDHQAVQAWADSLST
ATPLPVPR
MTTKTRSVTAHIPEQLAEKVDLMAERLERSKNWIVKQALSAWIDQEEERSRLTREALADVDAGRVIDHQAVQAWADSLST
ATPLPVPR
Download Length: 267 bp
>AT65793 NZ_CP017007:5273081-5273347 [Pseudomonas syringae pv. actinidiae]
ATGACAACCAAGACCCGATCTGTAACAGCTCACATACCCGAACAATTGGCTGAAAAAGTCGACCTGATGGCAGAGCGACT
CGAACGCTCTAAAAACTGGATCGTCAAACAGGCCTTGTCTGCATGGATAGATCAGGAGGAAGAACGTAGTCGCCTCACTC
GCGAAGCATTAGCCGATGTCGATGCTGGCCGTGTGATTGACCATCAGGCTGTTCAGGCCTGGGCTGACAGTTTAAGCACC
GCTACACCTCTGCCGGTTCCGCGCTGA
ATGACAACCAAGACCCGATCTGTAACAGCTCACATACCCGAACAATTGGCTGAAAAAGTCGACCTGATGGCAGAGCGACT
CGAACGCTCTAAAAACTGGATCGTCAAACAGGCCTTGTCTGCATGGATAGATCAGGAGGAAGAACGTAGTCGCCTCACTC
GCGAAGCATTAGCCGATGTCGATGCTGGCCGTGTGATTGACCATCAGGCTGTTCAGGCCTGGGCTGACAGTTTAAGCACC
GCTACACCTCTGCCGGTTCCGCGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K8LVV5 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K8LU58 |