Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 2214778..2215322 | Replicon | chromosome |
| Accession | NZ_CP016972 | ||
| Organism | Mycobacterium tuberculosis H37Ra | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | G0TLU9 |
| Locus tag | BB988_RS10735 | Protein ID | WP_003409896.1 |
| Coordinates | 2214778..2215074 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | P67299 |
| Locus tag | BB988_RS10740 | Protein ID | WP_003409899.1 |
| Coordinates | 2215071..2215322 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BB988_RS10680 | 2209811..2210161 | - | 351 | WP_003899096.1 | hypothetical protein | - |
| BB988_RS10685 | 2210172..2211074 | - | 903 | WP_003899097.1 | hypothetical protein | - |
| BB988_RS10690 | 2211095..2211286 | - | 192 | WP_003409876.1 | hypothetical protein | - |
| BB988_RS10695 | 2211287..2211583 | - | 297 | WP_003409877.1 | hypothetical protein | - |
| BB988_RS10700 | 2211823..2212038 | + | 216 | WP_003409878.1 | antitoxin | - |
| BB988_RS10705 | 2212035..2212346 | + | 312 | WP_003409881.1 | type II toxin-antitoxin system VapC family toxin | - |
| BB988_RS22300 | 2212320..2212841 | - | 522 | WP_003904745.1 | hypothetical protein | - |
| BB988_RS10715 | 2212816..2213193 | + | 378 | WP_010886136.1 | type II toxin-antitoxin system toxin HigB | - |
| BB988_RS10720 | 2213235..2213684 | + | 450 | WP_003409886.1 | type II toxin-antitoxin system antitoxin HigA | - |
| BB988_RS10725 | 2213681..2214226 | + | 546 | WP_003409891.1 | SecB-like chaperone | - |
| BB988_RS10730 | 2214115..2214729 | - | 615 | WP_003901296.1 | hypothetical protein | - |
| BB988_RS10735 | 2214778..2215074 | - | 297 | WP_003409896.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| BB988_RS10740 | 2215071..2215322 | - | 252 | WP_003409899.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| BB988_RS10745 | 2215309..2215803 | + | 495 | WP_003899099.1 | hypothetical protein | - |
| BB988_RS10750 | 2215963..2216370 | - | 408 | WP_003409913.1 | type II toxin-antitoxin system VapC family toxin | - |
| BB988_RS10755 | 2216374..2216646 | - | 273 | WP_003899100.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| BB988_RS10760 | 2216679..2217899 | - | 1221 | WP_003409919.1 | TetR family transcriptional regulator Mce3R | - |
| BB988_RS10775 | 2218798..2219595 | + | 798 | WP_003899101.1 | ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11268.64 Da Isoelectric Point: 6.8604
>T65742 WP_003409896.1 NZ_CP016972:c2215074-2214778 [Mycobacterium tuberculosis H37Ra]
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
Download Length: 297 bp
>T65742 NZ_CP016972:c2215074-2214778 [Mycobacterium tuberculosis H37Ra]
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9207.17 Da Isoelectric Point: 7.0150
>AT65742 WP_003409899.1 NZ_CP016972:c2215322-2215071 [Mycobacterium tuberculosis H37Ra]
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
Download Length: 252 bp
>AT65742 NZ_CP016972:c2215322-2215071 [Mycobacterium tuberculosis H37Ra]
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G0TLU9 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7U4BUZ2 |