Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3138003..3138146 | Replicon | chromosome |
| Accession | NZ_CP016952 | ||
| Organism | Citrobacter freundii strain SL151 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3138038..3138141 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3138003..3138146 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFQ28_RS14730 | 3134450..3135112 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| BFQ28_RS14735 | 3135136..3135792 | - | 657 | WP_046671220.1 | carbon-nitrogen hydrolase family protein | - |
| BFQ28_RS14740 | 3135899..3136129 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| BFQ28_RS14745 | 3136273..3136647 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| BFQ28_RS14750 | 3136651..3137523 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| BFQ28_RS14755 | 3137544..3137882 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 3138003..3138146 | - | 144 | - | - | Antitoxin |
| - | 3138038..3138141 | + | 104 | - | - | Toxin |
| BFQ28_RS14760 | 3138295..3138936 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| BFQ28_RS14765 | 3138937..3139128 | - | 192 | WP_003841978.1 | YebW family protein | - |
| BFQ28_RS14770 | 3139231..3139467 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| BFQ28_RS14775 | 3139568..3140956 | - | 1389 | WP_046671252.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T65660 NZ_CP016952:3138038-3138141 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT65660 NZ_CP016952:c3138146-3138003 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
