Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1344690..1344830 | Replicon | chromosome |
| Accession | NZ_CP016948 | ||
| Organism | Serratia surfactantfaciens strain YD25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1344734..1344830 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1344690..1344830 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATE40_RS06350 | 1339960..1340355 | + | 396 | WP_063919217.1 | RidA family protein | - |
| ATE40_RS06355 | 1340512..1341465 | + | 954 | WP_063919601.1 | prolyl aminopeptidase | - |
| ATE40_RS06360 | 1341497..1341727 | - | 231 | WP_019454717.1 | DNA polymerase III subunit theta | - |
| ATE40_RS06365 | 1342072..1342590 | + | 519 | WP_019454718.1 | non-heme ferritin | - |
| ATE40_RS06370 | 1342914..1343297 | + | 384 | WP_063919218.1 | CopC domain-containing protein YobA | - |
| ATE40_RS06375 | 1343300..1344181 | + | 882 | WP_063919219.1 | copper homeostasis membrane protein CopD | - |
| ATE40_RS06380 | 1344251..1344592 | + | 342 | WP_004940890.1 | YebY family protein | - |
| - | 1344690..1344830 | - | 141 | - | - | Antitoxin |
| - | 1344734..1344830 | + | 97 | - | - | Toxin |
| ATE40_RS06385 | 1345084..1345488 | + | 405 | WP_063919220.1 | hypothetical protein | - |
| ATE40_RS06390 | 1345485..1345703 | - | 219 | WP_019454729.1 | hypothetical protein | - |
| ATE40_RS06395 | 1346194..1346544 | + | 351 | WP_019454731.1 | DUF4377 domain-containing protein | - |
| ATE40_RS06400 | 1346584..1347420 | - | 837 | WP_063919221.1 | aminoglycoside phosphotransferase family protein | - |
| ATE40_RS06405 | 1347622..1348821 | + | 1200 | WP_063919222.1 | trans-2-enoyl-CoA reductase family protein | - |
| ATE40_RS06410 | 1348977..1349540 | + | 564 | WP_063919223.1 | DUF2975 domain-containing protein | - |
| ATE40_RS06415 | 1349548..1349763 | + | 216 | WP_025160282.1 | helix-turn-helix transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T65620 NZ_CP016948:1344734-1344830 [Serratia surfactantfaciens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT65620 NZ_CP016948:c1344830-1344690 [Serratia surfactantfaciens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
